Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321F03f
(521 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subuni... 111 4e-25
AY121632-1|AAM51959.1| 542|Drosophila melanogaster GM01935p pro... 111 4e-25
AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-P... 111 4e-25
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 60 2e-09
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 60 2e-09
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 60 2e-09
AE014298-2217|AAF48509.2| 1304|Drosophila melanogaster CG17209-P... 47 2e-05
AY069723-1|AAL39868.1| 492|Drosophila melanogaster LP02895p pro... 29 5.1
AE014296-1|AAF47322.2| 492|Drosophila melanogaster CG32475-PA p... 29 5.1
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 28 6.7
>Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subunit of
RNA polymeraseI (A) protein.
Length = 1644
Score = 111 bits (268), Expect = 4e-25
Identities = 56/85 (65%), Positives = 64/85 (75%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
VYGITVD RHL+LIADYMT++G F+P+SRKGME SSSPLQ MSFESSL FLK A +
Sbjct: 1555 VYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRA 1614
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D+L S LMVG R GTG F+L
Sbjct: 1615 DELSSPSSRLMVGLPVRNGTGAFEL 1639
>AY121632-1|AAM51959.1| 542|Drosophila melanogaster GM01935p
protein.
Length = 542
Score = 111 bits (268), Expect = 4e-25
Identities = 56/85 (65%), Positives = 64/85 (75%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
VYGITVD RHL+LIADYMT++G F+P+SRKGME SSSPLQ MSFESSL FLK A +
Sbjct: 453 VYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRA 512
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D+L S LMVG R GTG F+L
Sbjct: 513 DELSSPSSRLMVGLPVRNGTGAFEL 537
>AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-PA
protein.
Length = 1642
Score = 111 bits (268), Expect = 4e-25
Identities = 56/85 (65%), Positives = 64/85 (75%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
VYGITVD RHL+LIADYMT++G F+P+SRKGME SSSPLQ MSFESSL FLK A +
Sbjct: 1553 VYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRA 1612
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D+L S LMVG R GTG F+L
Sbjct: 1613 DELSSPSSRLMVGLPVRNGTGAFEL 1637
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 9 YGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQXMSFESSLLFLKDAILNSKK 185
YG+ V+ RHL L+ D MT G ++R G+ + L SFE ++ L DA +++
Sbjct: 1381 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET 1440
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D +R S +++G+L + GTG FDL
Sbjct: 1441 DPMRGVSENIIMGQLPKMGTGCFDL 1465
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 9 YGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQXMSFESSLLFLKDAILNSKK 185
YG+ V+ RHL L+ D MT G ++R G+ + L SFE ++ L DA +++
Sbjct: 923 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET 982
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D +R S +++G+L + GTG FDL
Sbjct: 983 DPMRGVSENIIMGQLPKMGTGCFDL 1007
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 9 YGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQXMSFESSLLFLKDAILNSKK 185
YG+ V+ RHL L+ D MT G ++R G+ + L SFE ++ L DA +++
Sbjct: 1381 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET 1440
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D +R S +++G+L + GTG FDL
Sbjct: 1441 DPMRGVSENIIMGQLPKMGTGCFDL 1465
>AE014298-2217|AAF48509.2| 1304|Drosophila melanogaster CG17209-PA
protein.
Length = 1304
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +3
Query: 9 YGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQXMSFESSLLFLKDAILNSKK 185
+G++VD RH+ L+A MT G ++R G+ + S SFE + L DA +
Sbjct: 1192 HGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQT 1251
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDLQHSH 272
D + S +++G GTG+F L H
Sbjct: 1252 DAINGVSERIILGMPACIGTGIFKLLQQH 1280
>AY069723-1|AAL39868.1| 492|Drosophila melanogaster LP02895p
protein.
Length = 492
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSR 92
V+ TV PRH + D++ NGI P SR
Sbjct: 49 VHNWTVIPRHFVAVYDFVIENGIRIPASR 77
>AE014296-1|AAF47322.2| 492|Drosophila melanogaster CG32475-PA
protein.
Length = 492
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSR 92
V+ TV PRH + D++ NGI P SR
Sbjct: 49 VHNWTVIPRHFVAVYDFVIENGIRIPASR 77
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D +R S +++G+L + GTG FDL
Sbjct: 1 DPMRGVSENIIMGQLPKMGTGCFDL 25
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,364,535
Number of Sequences: 53049
Number of extensions: 360492
Number of successful extensions: 884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -