Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321F03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93392-2|CAI46615.1| 120|Caenorhabditis elegans Hypothetical pr... 95 3e-20
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 95 3e-20
Z83219-10|CAI46565.1| 120|Caenorhabditis elegans Hypothetical p... 95 3e-20
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 95 3e-20
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 95 3e-20
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 57 7e-09
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 57 9e-09
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 54 5e-08
U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical ... 28 3.5
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41991-11|AAA83351.2| 199|Caenorhabditis elegans Hypothetical p... 28 4.7
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 4.7
AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical ... 27 6.2
Z82069-5|CAB04906.2| 739|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z93392-2|CAI46615.1| 120|Caenorhabditis elegans Hypothetical
protein Y48E1A.1b protein.
Length = 120
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/85 (50%), Positives = 62/85 (72%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ M+FE+++ FL++A+L+ ++
Sbjct: 9 VYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEE 68
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D++ S L++G L R GTG FDL
Sbjct: 69 DNVNSPSARLVMGALPRGGTGSFDL 93
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/85 (50%), Positives = 62/85 (72%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ M+FE+++ FL++A+L+ ++
Sbjct: 1626 VYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEE 1685
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D++ S L++G L R GTG FDL
Sbjct: 1686 DNVNSPSARLVMGALPRGGTGSFDL 1710
>Z83219-10|CAI46565.1| 120|Caenorhabditis elegans Hypothetical
protein Y48E1A.1b protein.
Length = 120
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/85 (50%), Positives = 62/85 (72%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ M+FE+++ FL++A+L+ ++
Sbjct: 9 VYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEE 68
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D++ S L++G L R GTG FDL
Sbjct: 69 DNVNSPSARLVMGALPRGGTGSFDL 93
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/85 (50%), Positives = 62/85 (72%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ M+FE+++ FL++A+L+ ++
Sbjct: 1626 VYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEE 1685
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D++ S L++G L R GTG FDL
Sbjct: 1686 DNVNSPSARLVMGALPRGGTGSFDL 1710
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/85 (50%), Positives = 62/85 (72%)
Frame = +3
Query: 6 VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ M+FE+++ FL++A+L+ ++
Sbjct: 1626 VYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEE 1685
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D++ S L++G L R GTG FDL
Sbjct: 1686 DNVNSPSARLVMGALPRGGTGSFDL 1710
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 57.2 bits (132), Expect = 7e-09
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 12 GITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQXMSFESSLLFLKDAILNSKKD 188
G V+ RHL L+ D MT G SR G+ L SFE ++ L +A +++++D
Sbjct: 1385 GSYVNYRHLALLCDVMTAKGHLMAYSRHGINRQEVGALMRCSFEETVDILMEAAVHAEED 1444
Query: 189 DLRXASXXLMVGRLXRTGTGVFDL 260
++ S +M+G+L R GTG FDL
Sbjct: 1445 PVKGVSENIMLGQLARCGTGCFDL 1468
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 56.8 bits (131), Expect = 9e-09
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 12 GITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQXMSFESSLLFLKDAILNSKKD 188
G V+ RHL L+ D MT G ++R G+ L SFE ++ L +A +++++D
Sbjct: 1378 GSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEED 1437
Query: 189 DLRXASXXLMVGRLXRTGTGVFDL 260
++ S +M+G+L R GTG FDL
Sbjct: 1438 PVKGVSENIMLGQLARCGTGCFDL 1461
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 NVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQXMSFESSLLFLKDAILNS 179
+ +GI +D RH+ L+AD MTY G ++R G+ + S L SFE ++ L +A S
Sbjct: 1290 DAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFS 1349
Query: 180 KKDDLRXASXXLMVGRLXRTGTGVFDLQHSH 272
++D + S +++G GTG F L +
Sbjct: 1350 QRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 1380
>U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical
protein C50E3.6 protein.
Length = 376
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 235 RXSRPTIXQXEAXRRSSFLEFNMASFKNKSDDS 137
+ S P + Q R S L N+ASF SDD+
Sbjct: 247 KESSPILLQKRGDRSSDHLHHNVASFSRNSDDN 279
>AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical
protein ZK6.2 protein.
Length = 347
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = -2
Query: 310 GGHDLDRLTLPYKCECCRSKTPVPVRXSRPTIXQXEAXRRSSFLEFNMASFKNKSDDSND 131
G + +R KC CR + + V S P+ + L+ + + +N + ND
Sbjct: 48 GENCFERPPFTRKCAACRFQKCLHVGMSLPSFLHLGEQNKEKCLDGIIRNLENLNFKRND 107
Query: 130 IXCNGDEDASIP 95
+ CN + S P
Sbjct: 108 LTCNYRNNFSNP 119
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 156 RTKATIRMTXAVTATKTPPFPSGS*AQRSRCTSCSRL*GSSGADQR 19
+T T R + T T+ PP + S +Q + ++CS G G R
Sbjct: 504 QTTTTARTSTTTTTTQAPPTTTTSTSQCASWSACSAQCGGCGTQSR 549
>U41991-11|AAA83351.2| 199|Caenorhabditis elegans Hypothetical
protein C42D4.13 protein.
Length = 199
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 382 IXDKLISSSSAEGVNFDX*QFSITXYASFIQQXRXED 492
+ +K IS ++ EG+ FD S+T Y F Q + ++
Sbjct: 138 VVEKAISKATKEGIQFDLGVNSLTNYVLFCQAEKFKN 174
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 156 RTKATIRMTXAVTATKTPPFPSGS*AQRSRCTSCSRL*GSSGADQR 19
+T T R + T T+ PP + S +Q + ++CS G G R
Sbjct: 504 QTTTTARTSTTTTTTQAPPTTTTSTSQCASWSACSAQCGGCGTQSR 549
>AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical
protein F17A9.2 protein.
Length = 533
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 175 FNMASFKNKSDDSNDIXCNGDEDASIPFRLIGSKIPLY 62
F + F DDSN+ NG+ + IP ++G P Y
Sbjct: 39 FCVGEFFGDDDDSNEKVINGNIEFPIPTYILGPANPRY 76
>Z82069-5|CAB04906.2| 739|Caenorhabditis elegans Hypothetical
protein W04A8.6 protein.
Length = 739
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 63 YNGIFEPMSRKG-MEASSSPLQXMSFESSLLFLK-DAILNSKKD 188
Y I +P + KG M +PL SF SS +K D++LN + +
Sbjct: 254 YQVITKPKTTKGPMSCPGAPLDDRSFRSSSRKIKDDSVLNRRSE 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,565,420
Number of Sequences: 27780
Number of extensions: 170899
Number of successful extensions: 440
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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