Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321E07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 27 1.7
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 27 2.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 3.0
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 25 5.2
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 25 6.8
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 25 6.8
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 9.0
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 25 9.0
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 9.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.0
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 25 9.0
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 361 RSQKQLMDEISNGHEPAIKIEYVNEAEKDSSE-PELTRDSVYEEVEFLDDV 510
R QK+ +DE NG I N +KD+ E P + +S YEE E +V
Sbjct: 60 REQKEELDEEENGKPSQISAFISNGHQKDTLENPAI--ESSYEESEHARNV 108
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -1
Query: 80 IDKPRH*KIKSINKENVKTRFNNFQN 3
ID+ ++ +KS+N+EN+K F+ +N
Sbjct: 87 IDRFKNANLKSVNEENLKKFFSELEN 112
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 421 EYVNEAEKDSSEPELTRDSVYEEVEFLDD 507
+ VNE +++ + E D VYEE+EF DD
Sbjct: 1848 DIVNENDENYEDSE--DDGVYEEMEFEDD 1874
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = +1
Query: 229 VYGEMLTKCYAFSWIQLDSEDYNQICDPCIKRLRESCSFRNLV 357
+ G +L C A++ + +++ + + P + LR+ C+++ V
Sbjct: 290 IVGWLLNLCIAYTIVDVNAAMNDDLGQPFVVYLRQVCNYKTTV 332
>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
Arc21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 286 EDYNQICDPCIKRLRESCSFRNLVIR 363
E I D CI R +C FRN I+
Sbjct: 38 ESQMDIIDECIGLFRANCFFRNFEIK 63
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 289 PPSLTGSTKKRSIWLTFRRKPL 224
PPSL S RS+W T +P+
Sbjct: 30 PPSLNESGDTRSVWTTHTGEPV 51
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 9.0
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = -2
Query: 196 INILDNHIPNSICIF 152
+N+ + ++PNS+CI+
Sbjct: 367 LNVANKYLPNSVCIY 381
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 431 FTYSIFIAGSWPLLISSISCFW 366
FT+SI I+ PL ISS W
Sbjct: 179 FTHSIIISAVLPLAISSCMYLW 200
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = -2
Query: 301 FDCSP---PSLTGSTKKRSIWLTFRRKPLYVLAICVRTINILDNHIPNSICIFRSTFSLQ 131
F C P P + G+ K WL R V C+R + + + +C F Q
Sbjct: 104 FLCGPNGAPRMCGTCK---CWLPDRSHHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQ 160
Query: 130 FPFF 119
F F+
Sbjct: 161 FLFY 164
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 289 PPSLTGSTKKRSIWLTFRRKPLYVLAICVRTI 194
PP +T S +R WL P+ L+ ++TI
Sbjct: 124 PPRVTLSESRRDRWLQGLSDPMVPLSSLIKTI 155
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 238 RRKPLYVLAICVRTINILDNHIPNSICIFRSTF 140
R + L + I +N LDN++ S C+F S +
Sbjct: 47 RNQLLRSIHIIQNLLNELDNYVDRSDCLFHSVW 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,719
Number of Sequences: 5004
Number of extensions: 41463
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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