Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321E06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    99   5e-22
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.0  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   5.2  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   5.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   6.8  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.0  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   9.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 98.7 bits (235), Expect = 5e-22
 Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = -2

Query: 520  SCSLTAYKLTPSGYEWGVRNTDRGNNPK-GYLPSHYERVQMLLSDRFLGYFMVPSQGSWN 344
            S SL AY ++  G EWG +N D  ++   GY PS  E+ Q+LLSDR  G+F+VP +G WN
Sbjct: 2249 SISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGFFLVPEEGVWN 2308

Query: 343  YNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 173
            YNF G    P M Y ++L  P  F+   HRP H +++  +E      +  D  D FA
Sbjct: 2309 YNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELE--TNDRLEEDMPDAFA 2363


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 457 DRGNNPKGYLPSHYERVQMLLSDRFL 380
           D GN  + Y+P  YER+   + ++ +
Sbjct: 191 DNGNGEQNYIPEQYERLDSPVKEKII 216


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 119 FYYNIK*NTMKNASRLNLCEQVFSVGGDCWRCSIFHSS-KVHEMRRSVNLVVELARVAE 292
           F+Y I    +K  + L+L   VFS+      C+I  SS K+    ++ N+V ++    E
Sbjct: 215 FFYPILMEHIKRCTSLDLTNSVFSLSKVNTDCAILTSSGKLKIFSKAQNIVFDVLLALE 273


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 381 WAISWCRPRAVGI 343
           WA+SW  PR VG+
Sbjct: 399 WALSWNTPRVVGV 411


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 271 YHEVHRPAHFMNFAAMEDAAAPTIAADREDL 179
           +HE H  +HF N A   +A++    A  + L
Sbjct: 7   FHEHHAKSHFHNNACQSNASSSACRASEDHL 37


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 337 FMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAP 206
           F+ +   P+ +   + G   EF HE+H  A F+   A ++   P
Sbjct: 42  FLSLHPAPSAESVEKEGAELEFEHELHLLAGFLGLIAAKEEETP 85


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 369 WCRPRAVGIITLWASVTTR 313
           WC   AV +  LWA++ TR
Sbjct: 416 WCPQNAVFVPGLWANLATR 434


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 356 GQLEL*LYGRPSRPEYEVRCATRQP 282
           G+L L +Y    R EY+V C T +P
Sbjct: 521 GELHLEVYVERMRREYKVDCETGKP 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,253
Number of Sequences: 5004
Number of extensions: 42025
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)