Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321E06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...   186   1e-47
Z97191-1|CAE17890.1|   70|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U40952-3|AAA81738.2|  205|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score =  186 bits (452), Expect = 1e-47
 Identities = 83/116 (71%), Positives = 92/116 (79%)
 Frame = -2

Query: 520  SCSLTAYKLTPSGYEWGVRNTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNY 341
            S SLTAYKLTPSGYEWG  NTD+GNNPKGY+P+HYE+VQMLLSDRFLGYFMVPS G WNY
Sbjct: 2215 SVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNY 2274

Query: 340  NFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 173
            NF G R  P MK+ V L NP+E+YHE HRP HF NF A +D    T +ADRED FA
Sbjct: 2275 NFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLG-TGSADREDAFA 2329


>Z97191-1|CAE17890.1|   70|Caenorhabditis elegans Hypothetical
           protein H32K16.2 protein.
          Length = 70

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 409 VQMLLSDRFLGYFMVPSQGSWNYNFMGVRHD 317
           V ML+S  +   F   SQ SW YN  GV +D
Sbjct: 13  VLMLISTSYCQLFGGWSQPSWGYNSQGVGYD 43


>U40952-3|AAA81738.2|  205|Caenorhabditis elegans Hypothetical
           protein C03B1.9 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 340 NFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAAD 191
           +F+  ++D  M+   ++G   E YH+ +  ++F+N  A+E      IA D
Sbjct: 109 HFINKQNDNYMEARAEIGLLIELYHKDYLKSNFLNNDALEKLIILIIATD 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,681,282
Number of Sequences: 27780
Number of extensions: 244985
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)