Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321E04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0036 + 3217163-3217584,3217752-3218322 30 0.98
06_03_1126 + 27805982-27806475,27806617-27807202 29 2.3
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 3.0
01_06_1749 - 39636951-39638102 28 4.0
01_06_0494 - 29778423-29778647,29778758-29779150 28 5.2
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601... 28 5.2
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 6.9
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 27 6.9
02_03_0286 + 17317316-17317516,17317610-17318245 27 6.9
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 27 6.9
01_06_1160 - 34996840-34996979,34997316-34997478,34997970-349983... 27 6.9
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 27 9.1
08_02_0825 - 21570628-21570715,21571436-21571812,21572364-215727... 27 9.1
06_03_0408 - 20485027-20486598 27 9.1
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 27 9.1
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 440 ITIHWPSFYNVV-TGKTLALPNLIALQH 520
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 348 SNRNALLLHGRNRQGGGTYPCGLPRGPTTSNGHA 247
S+ A H + +GGG + C TTSNGH+
Sbjct: 221 SSHAAAQQHRHHHRGGGGFCCFTSNPETTSNGHS 254
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 64 LRHPLPPPACFHRRR 20
LR P PPP C HRRR
Sbjct: 79 LRPPPPPPRCCHRRR 93
>01_06_1749 - 39636951-39638102
Length = 383
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 376 SIVTTAAPPFEPKRITA 326
S+ + AAPPF+P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181
>01_06_0494 - 29778423-29778647,29778758-29779150
Length = 205
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 279 GVRTGRYHHPAYFCREAVMRFGSKGGAAVVTILRS*NLYLEGGP 410
G+++ HPA R +RF + G +++T + ++L+G P
Sbjct: 87 GLKSVFVFHPASRTRGVAIRFHPRNGRSLLTYVAGSTIFLDGEP 130
>01_05_0013 -
17156017-17157647,17157977-17158144,17160064-17160113,
17160796-17160833,17161102-17161212
Length = 665
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 76 KLRELRHPLPPPACFHRRRPHDS 8
K++ELR L AC HR+ HD+
Sbjct: 165 KMKELRRRLVDYACHHRKHGHDA 187
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 452 WPSFYNVV-TGKTLALPNLIALQH 520
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = -3
Query: 435 LTIGRIGYRAPPRDISSKISV*LQRLPHPSNRNALLLHGRNRQGGGTYPC----GLPRGP 268
L I RA P + K V HPS + R+++ G PC GL +GP
Sbjct: 1644 LLAASINPRAAPEPLQIKTRVSSSGSVHPSREIQIASQIRDQRVMGRQPCCEKVGLKKGP 1703
Query: 267 TTSNGHADLV 238
T++ LV
Sbjct: 1704 WTADEDQKLV 1713
>02_03_0286 + 17317316-17317516,17317610-17318245
Length = 278
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 421 NWVPGPPSRYKF*DLSIVTTAAPPFE 344
N + GP K D + TTAAPP+E
Sbjct: 138 NILIGPGGALKICDFGMATTAAPPYE 163
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -2
Query: 61 RHPLPPPACFHRRR---PHDSHW 2
R P PPPA H RR P HW
Sbjct: 52 RRPRPPPAHLHLRRISQPRSPHW 74
>01_06_1160 -
34996840-34996979,34997316-34997478,34997970-34998388,
34998413-34998620
Length = 309
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 96 VVLELTKSYVSFVTPSRPPRASIADARTT 10
+V L + SF PSRP RAS A TT
Sbjct: 269 LVFNLAAAASSFALPSRPQRASAIAAATT 297
>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
Length = 680
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 452 WPSFYNVV-TGKTLALPNLIALQH 520
W F N+V +G TL+LP + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437
>08_02_0825 -
21570628-21570715,21571436-21571812,21572364-21572755,
21573943-21574311,21574395-21574580,21574709-21574845,
21575030-21575089,21575206-21575277,21575399-21575542,
21575702-21575773,21575928-21576060,21576157-21576247
Length = 706
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 369 LQRLPHPSNRNALLLHGRNRQGGGTYPCGLPRGPTTSNGHADLVM 235
L P S+R A GR++ GGG LP G TS G + LV+
Sbjct: 228 LDSTPSSSSRAAAAAVGRSKGGGGA--ARLPIGVGTSLGASALVL 270
>06_03_0408 - 20485027-20486598
Length = 523
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 190 DKLQRWRHPNNSLASHY*IRVTITGGRTSWESARVGT 300
D + RW+ SL IRV + G R S++S +GT
Sbjct: 265 DVVTRWQAVAPSLPDDLFIRVLVQGQRASFQSLYLGT 301
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 96 HNIQVPPSRQLAVKRDRSGRTTLWIVAVI 182
H + +PP QLA+K G T LW++ +I
Sbjct: 748 HVVYLPPV-QLAIKIYVDGNTGLWLICII 775
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,003
Number of Sequences: 37544
Number of extensions: 363816
Number of successful extensions: 874
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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