Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321E02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   1.3  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   2.2  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   6.8  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   6.8  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   9.0  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.0  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   9.0  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -3

Query: 381 EQCDFAQFWNRVHQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDDVT 202
           E  D    W R+ +  E   + + FH+   + +   +       D+  L  L+GGI ++ 
Sbjct: 600 EYVDLVTVW-RIQKRIE--EQFNAFHEGFSELIPQEL---INVFDERELELLIGGISEID 653

Query: 201 LKHWVKKYGWR 169
           ++ W K   +R
Sbjct: 654 MEDWKKHTDYR 664


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 384 LEQCDFAQFWNRVHQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLAN 229
           LE C+F   W  + + P+LCS +  + D I   +  + G+ +  +D   L N
Sbjct: 278 LEACEF---WLAIAEQPDLCSALGPYLDKIVPML--LQGMVYSDMDLLLLGN 324


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -1

Query: 443 FLNPWWKMRQFLKSNT*PTFWSNV-TLLSFGIEYT----KCQSCAVVSVASMTQSESLSV 279
           F+  W  MR +L        W  + T+ SF +++     KC     V++  +T  + +++
Sbjct: 283 FVFVWIYMRHYLNFKIMWAVWGTMRTINSFDLDWAAEQYKCWISRDVTLILLTALQLVNI 342

Query: 278 MWLVSHFRL 252
            WL+   R+
Sbjct: 343 YWLILILRI 351


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 249 DKNNLANLLGGIDDVTLKHWVKKYGWRDDGSLIFIANQ--DENIKTKN 112
           DK  LAN  G     TL+H+ ++       SL  ++++  ++ + T+N
Sbjct: 26  DKEKLANARGRASSATLRHYNRRRSSYSASSLSSLSSKPTEKEVPTRN 73


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 333 ELCSRISGFHDSIRKFVCHVVGITFQT 253
           E CS+  G+H++  K  C +V  +  T
Sbjct: 212 EYCSKHPGYHEAASKSTCLIVDRSLDT 238


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 234  ANLLGGIDDVTLKHWVKK--YGWRDDGSLIFIANQDENIKTKN 112
            A + G ++ V +  ++++  +  +D GSL+ + N+D NI  +N
Sbjct: 1287 AAIEGSVEIVQILSYLRRIRHPPKDSGSLLEVKNEDVNIYKRN 1329


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 386 FWSNVTLLSFGIEYTKCQS 330
           FW N +LL   +EYT C +
Sbjct: 205 FWRNDSLLQILMEYTDCSN 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,608
Number of Sequences: 5004
Number of extensions: 47307
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)