Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321D09f
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    27   1.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   2.0  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    26   2.7  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   4.7  

>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 137 HRLKTTPAQPLEKSWKLLPPQEGP*VVD 220
           +R++    Q L+KSW  L P E   V+D
Sbjct: 81  NRIRRQVVQILDKSWSFLAPNESAKVID 108


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 36   SSGSQR*HSCT--KQASSTSRSQKDFNHYND 122
            +S ++R HS +  KQASS S  +    HYND
Sbjct: 925  ASEAERAHSYSNRKQASSESSPESQSTHYND 955


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 44  KPTLTLLHQAGLVYV-PVSE--GLQPLQRQPPVQHRLKTTPAQPLEKSWKL 187
           KPT  +     L Y+ P  +  GL  L+R   +Q  L+TT    L+ +W L
Sbjct: 236 KPTFPIYKAQDLAYLFPTFDPLGLDLLRRMLRLQPELRTTGQDALQHAWFL 286


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 81  STSRSQKDFNHYNDSHQCSIV*RQHRRNLW 170
           S   + K +NH++   Q   V  Q+ RN W
Sbjct: 610 SRESNHKKYNHFHQKSQTRRVMEQYDRNSW 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.283    0.103    0.254 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,159,486
Number of Sequences: 5004
Number of extensions: 18734
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 18 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 45 (21.6 bits)