Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321D09f
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0862 + 28353235-28354431 31 0.28
03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948 31 0.49
04_02_0012 + 8537124-8537464,8537558-8537693,8538811-8538861,854... 29 1.1
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 29 1.5
04_03_0664 + 18501248-18502802,18503370-18505054 29 2.0
11_04_0011 - 12147113-12147278,12148216-12149145,12149463-121498... 27 4.6
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 27 4.6
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 27 6.0
02_05_0452 + 29127686-29128078,29128155-29128242,29129287-291294... 27 6.0
12_02_1179 - 26720533-26721021,26721329-26722597 27 8.0
01_06_1365 - 36690267-36692222 27 8.0
>03_05_0862 + 28353235-28354431
Length = 398
Score = 31.5 bits (68), Expect = 0.28
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 59 LLHQAGLVYVPVSEGLQPLQRQPPVQHRLKTTPAQPLEKSWKLLPPQEGP*VVDV 223
L+H+A V P GL + V HR + A+P +++WK + P P VVDV
Sbjct: 161 LIHKAVPVPAP-DGGLLVVVIYRQVHHRNQWATARPGDRAWKSVKPTSIPAVVDV 214
>03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948
Length = 401
Score = 30.7 bits (66), Expect = 0.49
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +3
Query: 36 SSGSQR*HSCTKQASSTSRSQKDFNHYNDSHQCSIV*RQHRRNLWRSRGNYS 191
++G+++ SC A+ ++ + NH +D ++C+ + HR + RG+ S
Sbjct: 201 NAGAEKVESCDDVATGNKKTGGNVNHSSDRNRCTGLPPVHRATYTQQRGSLS 252
>04_02_0012 +
8537124-8537464,8537558-8537693,8538811-8538861,
8540190-8540413,8540491-8540715,8541520-8541619,
8541703-8541763,8543029-8543100,8543183-8543406
Length = 477
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 168 WRSRGNYSHPRKDPRSWTSRPSTGFSPSRPK 260
W+ Y +P S SR S+GFSPS P+
Sbjct: 399 WKKFNCYDTDSSNPLSINSRNSSGFSPSAPE 429
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 152 TPAQPLEKSWKLLPPQEGP*VVDVPAFDRLLSVQAQGLT*GLTLD 286
T +P EK KL+P + G D+ + SV A+ L G+T+D
Sbjct: 78 TTMKPSEKFLKLIPVRNGSSPSDIEECTNVPSVAAESLLEGVTVD 122
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -2
Query: 409 EQLSEMSFRNLPQLQVIQERLSLQALRKRFQ--QAREWQLQDGV 284
+ + E R LPQ+QV+ + + ++ +R + + A WQL+D V
Sbjct: 36 KSVQERLERTLPQVQVVFDAIDMERIRDQSEALDAWLWQLRDAV 79
>11_04_0011 -
12147113-12147278,12148216-12149145,12149463-12149834,
12149884-12150007,12150343-12150391
Length = 546
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 23 RMEA*QRKPTLTLLHQAGLVY-VPVSEGLQPLQRQP 127
RM +K L LLH AG++Y VP +E + P+Q P
Sbjct: 359 RMREVVKKEVLKLLH-AGIIYPVPYNEWVSPVQVVP 393
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 74 GLVYVPVSEGLQPLQRQPPVQHRLKTTPAQPLEKSWKLLPP 196
G +P + L+ LQ QP Q +L+ P+ P K + PP
Sbjct: 139 GYGMMPATHTLRMLQHQPEPQPQLQHPPSPPHPKEECISPP 179
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 126 HQCSIV*RQHRRNLWRSRGNYSHP 197
HQ + V R H RN WR G+ S P
Sbjct: 494 HQYAEVMRTHYRNAWRLMGDCSDP 517
>02_05_0452 +
29127686-29128078,29128155-29128242,29129287-29129419,
29129506-29130178
Length = 428
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 116 QRQPPVQHRLKTTPAQPLEKSWKLLPPQ 199
Q+QPP Q +L+ Q + W LPP+
Sbjct: 47 QQQPPQQQQLQRQEHQQQQGRWANLPPE 74
>12_02_1179 - 26720533-26721021,26721329-26722597
Length = 585
Score = 26.6 bits (56), Expect = 8.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 33 RSSGSQR*HSCTKQASSTSRSQKDFNHYNDSHQCSIV*RQHRRNLWRSRGNYSH 194
R GS HSC + S DF+ + QC + RR LW ++ + SH
Sbjct: 311 RDDGSCDSHSCDLNSVHLST---DFDSQHSVGQCGSGSTRARRQLWCNKSDKSH 361
>01_06_1365 - 36690267-36692222
Length = 651
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 110 PLQRQPPVQHRLKTTPAQPLEKSWKLLPPQE 202
PL R PP+ L+ TPA +E+S +P ++
Sbjct: 356 PLSRLPPMMSVLEDTPATIVERSDGQIPVED 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.283 0.103 0.254
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,187,526
Number of Sequences: 37544
Number of extensions: 138968
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 18 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 45 (21.6 bits)
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