Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321D09f
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   4.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   9.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.7  

>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 14/68 (20%), Positives = 29/68 (42%)
 Frame = +3

Query: 60  SCTKQASSTSRSQKDFNHYNDSHQCSIV*RQHRRNLWRSRGNYSHPRKDPRSWTSRPSTG 239
           SC++  +   R  + +   ++  +  +  R +R+   RSR    +  K+ R +     T 
Sbjct: 3   SCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETS 62

Query: 240 FSPSRPKA 263
              SR +A
Sbjct: 63  KERSRDRA 70


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 14/67 (20%), Positives = 27/67 (40%)
 Frame = +3

Query: 60  SCTKQASSTSRSQKDFNHYNDSHQCSIV*RQHRRNLWRSRGNYSHPRKDPRSWTSRPSTG 239
           SC++  S   +  + ++  ++  +  +  R  RR   RSR       K+ R +     T 
Sbjct: 252 SCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETS 311

Query: 240 FSPSRPK 260
              SR +
Sbjct: 312 RERSRDR 318


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 110 PLQRQPPVQHRLKTTPAQP 166
           PL +QP   +  + TP QP
Sbjct: 238 PLYQQPERHYERRATPPQP 256


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 36   SSGSQR*HSCTKQASSTSRSQKDFNHYNDSH 128
            +S  Q+     +Q     + Q+  NHY D H
Sbjct: 1444 TSAPQQPQQQQQQQQQQQQQQQQLNHYPDLH 1474


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 13/67 (19%), Positives = 28/67 (41%)
 Frame = +3

Query: 60  SCTKQASSTSRSQKDFNHYNDSHQCSIV*RQHRRNLWRSRGNYSHPRKDPRSWTSRPSTG 239
           SC++  +   R  + +   ++  +  +  R +R+   RSR    +  K+ R +     T 
Sbjct: 3   SCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETS 62

Query: 240 FSPSRPK 260
              SR +
Sbjct: 63  KERSRDR 69


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
          protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 82 DEACLVQECQRWLPLLR 32
          DEA   ++CQ W    R
Sbjct: 35 DEALKERQCQNWFDKFR 51


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 174 FSRGCAGVV 148
           FSRGC+G V
Sbjct: 415 FSRGCSGFV 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.283    0.103    0.254 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,794
Number of Sequences: 438
Number of extensions: 1307
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 18 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (19.6 bits)