Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321D06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 102 2e-22
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 102 2e-22
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 98 4e-21
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.015
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 30 0.98
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 5.2
06_03_0630 + 22926652-22928133 27 6.9
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206... 27 6.9
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 27 9.1
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 27 9.1
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 102 bits (245), Expect = 2e-22
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 242 TSGGVTXAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 418
G+ T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 419 KLGEYLITCG 448
+LG+YL+ G
Sbjct: 121 RLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 102 bits (245), Expect = 2e-22
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 242 TSGGVTXAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 418
G+ T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 419 KLGEYLITCG 448
+LG+YL+ G
Sbjct: 121 RLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 97.9 bits (233), Expect = 4e-21
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 242 TSGGVTXAGTRYIYLSGTDHI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 418
G+ GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120
Query: 419 KLGEYLITCG 448
+LG+YLI G
Sbjct: 121 RLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 167 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 259
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 30.3 bits (65), Expect = 0.98
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 286 QWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSAGRICRGEVRRIFNYLWLLE 456
+W R Y P W+ GRRA D S+ T PT GR+ E +I ++++LLE
Sbjct: 33 KWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIKGRVSGKE--QIKHFVYLLE 90
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -3
Query: 252 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 127
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
>06_03_0630 + 22926652-22928133
Length = 493
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 116 RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTXA 265
RCV A G DG V A++E + E + + VA + N SG VT A
Sbjct: 438 RCVELAMAGGGDGGVRARAERWRERAAEAVAAGGSSERNLRAFASGAVTQA 488
>05_01_0269 +
2062467-2062475,2063252-2063303,2063668-2063743,
2064156-2064288,2064400-2064578,2065228-2065495,
2066250-2066342,2066667-2066776,2066887-2066905,
2066985-2067170
Length = 374
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 318 SFARMIWSVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSSFEIS 181
+F +I+ P + R+ ++ P LV S S S+P TIF+ S I+
Sbjct: 251 AFEGLIFGCPHLSICRIQPVMMP-LVQSCSLSQPPTIFSCLSLSIT 295
>09_02_0152 +
5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 134 AIAGHDGNV--WAKSEGFEISKDEVAKIVAGFENESLLTSGGVTXAGTRYIYLSGTDHII 307
A AG D + W K +G + + + + G + E + S + G+RY+ G+ HI+
Sbjct: 57 ASAGDDKKISLWHK-KGQNVGQLPTSTVDRGDDIEECIYSISFSNKGSRYLCSGGSGHIV 115
Query: 308 R 310
R
Sbjct: 116 R 116
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 244 EWRRDDXGHAVHLPQWHRPYHPREAWQGRRALHEDTA 354
E RRD +WH+ Y R+A QG A + + A
Sbjct: 684 ETRRDLNRKKAQFEEWHQRYMERKASQGEDANNSEVA 720
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,021
Number of Sequences: 37544
Number of extensions: 290693
Number of successful extensions: 693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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