Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321D06f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.       33   0.61 
AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens ...    33   0.61 
AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 1...    31   1.9  
AB097001-1|BAC77354.1|  910|Homo sapiens putative NFkB activatin...    29   7.5  

>BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.
          Length = 336

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 98  KQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTXAGT 271
           KQ  AS  C++  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT  G 
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 272 RYIYLSGT 295
               L GT
Sbjct: 224 VSSLLGGT 231


>AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10936 fis, clone OVARC1000959, weakly similar to
           HYPOTHETICAL PROTEIN MJ0933. ).
          Length = 298

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 98  KQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTXAGT 271
           KQ  AS  C++  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT  G 
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 272 RYIYLSGT 295
               L GT
Sbjct: 224 VSSLLGGT 231


>AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 19
           variant protein.
          Length = 336

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 98  KQLMAS-RCVTK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTXAGT 271
           KQ  AS  C++   A+A   G+ WA   G  +SK    +++  +E   + T+GGVT  G 
Sbjct: 165 KQYSASWMCLSLLVALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 272 RYIYLSGT 295
               L GT
Sbjct: 224 VSSLLGGT 231


>AB097001-1|BAC77354.1|  910|Homo sapiens putative NFkB activating
           protein protein.
          Length = 910

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 173 EGFEISKDEVAKIVAGFENESLLTS-GGVTXAGTRYIYLSGTDHIIRAKLGKVGVHC 340
           E  E S DEV K++  F +  L     G +  GTR + L G+  +   K  K+ V+C
Sbjct: 455 EVVESSSDEVDKLLKEFLHLDLTAPIPGASPEGTRQLLLEGSLRMKEGKDSKMDVYC 511


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,432,203
Number of Sequences: 237096
Number of extensions: 1516138
Number of successful extensions: 2670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2670
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)