Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321D04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ... 31 0.10
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 28 0.97
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 2.2
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 26 3.9
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 5.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 5.2
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.8
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 25 9.0
>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 31.1 bits (67), Expect = 0.10
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Frame = -2
Query: 520 PISAMHKVAEILNLPKMRVYEVATFYTM-FIRRPIGKYHVQVCTTTPCWLRGSDAILNAI 344
P +AM+++A + + V+ + Y F RP K V++C + C +
Sbjct: 47 PPTAMYEIASLAGVSIDYVHSLILAYPNDFFWRP-KKPRVRICNSWMCQQAAEE------ 99
Query: 343 KQETNCEVGGNSPCGK--FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 176
+ +N + S K F V CLG C P + +ND Y + E +I+ L
Sbjct: 100 QGNSNWDSQCRSVATKYGFDVENTGCLGNCFQGPAMWINDKIYGVNTKEKLVDIMEAL 157
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 351 MQLNRKQTVRLEATVLVASFLFQRLN 274
MQ++ +TV+L T+ A+ L QRLN
Sbjct: 201 MQIHANKTVQLSQTIQKATLLLQRLN 226
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 397 CTTTPCWLRGSDAILNAIKQETNCEVGGN 311
C T W+ G A+ A + NCE G N
Sbjct: 508 CETGKSWMYGGMALRMAAALQLNCEQGSN 536
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 48 ALSASCTPKPGPVGSSVSEVNPP 116
A S TP PG V +++S + PP
Sbjct: 75 AQSNIATPSPGTVAAAISGIQPP 97
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 317 SNLTVCFLFNCIQYGIRASKPARSSRTYLNMVFTNWSSYEHCVKCSYF 460
S L + NCI R + + LN+ T W ++H +K +F
Sbjct: 89 SALAFAVIHNCI-LDSREYRAQVADAQILNLAITYWIDWQHKLKAPFF 135
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 385 PCWLRGSDAILNAIKQETNC--EVGGNSP 305
PCWL+ +A+K + C E+G +SP
Sbjct: 477 PCWLKIQQPNFDAVKNASWCRVEIGCSSP 505
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -2
Query: 361 AILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLS 209
A N ++ C+ G +PC + + +EC + + + DY+ DLS
Sbjct: 39 ACFNCKARKVRCD--GANPCKACASNNLECTYPVKDEKEMDYSKDYFIDLS 87
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 232 DDYYEDLSVEDTKEIISKLKKD 167
+ YYE S ED +I++K KK+
Sbjct: 39 EGYYESESEEDEDQILNKEKKE 60
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 249 GAFTQAPKHSTSETENLPQGLLPPTSQFVSCLIAFNMASE 368
GA +A +HS S +++ P+G L + S +A ++A E
Sbjct: 439 GAAAEAAEHSGSGSDSYPEGPLATIPESDSESMASDLAGE 478
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 209 CRRYKRNY-QQIKEGREAQTW 150
CRRYKR Y + + + RE W
Sbjct: 312 CRRYKRAYVRHLLQARELVAW 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,556
Number of Sequences: 5004
Number of extensions: 46084
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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