Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321D04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152... 125 2e-29
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 36 0.026
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 29 2.3
08_01_0414 + 3684491-3684589,3684770-3684838,3685004-3685033,368... 29 3.0
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 28 5.2
08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444 28 5.2
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 28 5.2
08_01_0434 + 3809681-3810016,3810039-3811100 27 6.9
05_03_0613 - 16192024-16192470,16192579-16192734 27 6.9
03_01_0344 + 2704860-2705156,2705249-2705494 27 6.9
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 27 9.1
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 27 9.1
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487... 27 9.1
>05_06_0024 +
25014274-25014375,25014655-25014720,25015117-25015233,
25015757-25015834,25015911-25016016,25016150-25016196,
25016386-25016463,25016898-25016963,25017102-25017165,
25017406-25017428
Length = 248
Score = 125 bits (301), Expect = 2e-29
Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 11/152 (7%)
Frame = -2
Query: 520 PISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIK 341
P++AM+ +A+I+ + +RVYEVATFYTMF R +GKYH+ VC TTPC +RGS I A+
Sbjct: 89 PVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSREIEEALL 148
Query: 340 QETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVND----------DYYEDLSVEDTKE 191
+ + + G FSV E+EC+G CVNAPMI V D +YYEDL+ + E
Sbjct: 149 EHLGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVE 208
Query: 190 IISKLKKDEKPKPGPR-SGRFASEPLGGLTSL 98
I+ LK+ E P G + R P GG T+L
Sbjct: 209 IVEMLKRGETPPRGTQHPERKNCGPAGGNTTL 240
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 349 AIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY--YEDLSVEDTKEIISKL 176
A+K EV G+ P G F + + + P I +ND Y +E ED +E+ +L
Sbjct: 229 AVKSSETSEVKGSLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDLQEVDDRL 288
Query: 175 KKDE 164
+++E
Sbjct: 289 EEEE 292
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 409 HVQVCTTTPCWLRGSDAILNA-IKQETNCEVGGNSP 305
H+ C +TP W R SD LN KQ+ + E G +P
Sbjct: 289 HMITCPSTPEWKRSSDLDLNGEAKQDDDDENGDLAP 324
>08_01_0414 +
3684491-3684589,3684770-3684838,3685004-3685033,
3685540-3685596,3685884-3685954,3686185-3686266,
3686470-3686559,3686647-3686685
Length = 178
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -2
Query: 211 SVEDTKEIISKLKKDE 164
++EDTK++ISK KKDE
Sbjct: 111 NIEDTKQMISKAKKDE 126
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 385 PCWLRGSDAILNAIKQETNC-EVGGN-SPCGKFSVSEVECL 269
PC + +A I C E+G + SPCG+F V+ V CL
Sbjct: 451 PCAVLAPEACCLTISHAVLCSEMGTHFSPCGRFLVACVACL 491
>08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444
Length = 391
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 158 GLLVLL*FADNFFCIFYRQVLIVIIIDLYHWGVH 259
GL +LL A F CI Y+ LI+I++ L H G+H
Sbjct: 344 GLSLLLANAFLFECIQYQLHLILILLVLDHSGLH 377
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 268 PNIQPLKQKTCHKDCCLQPHSLFPV*LHSIWHQSLEASKE*SYILEHGIYQLV 426
PNI P+ DCC H P L +I H S EA + + IYQ++
Sbjct: 543 PNILPVLGIVETYDCCYMLHPKSPYTLENIMHYSPEALWS-DWHIRFLIYQII 594
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 424 PIGKYHVQVCTTTPCWLRGSDA-ILNAIKQETNCEVGGNSPCGKF 293
P Y V++ TT+ G D IL+ ++ N + GGN PCG F
Sbjct: 213 PALPYQVRLLTTSVTV--GDDLYILDTSRRHVNDDGGGNVPCGCF 255
>05_03_0613 - 16192024-16192470,16192579-16192734
Length = 200
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -2
Query: 322 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY 224
+GG SPC + C C+ AP +D +
Sbjct: 1 MGGGSPCASCKLLRRRCTKDCIFAPFFPADDPH 33
>03_01_0344 + 2704860-2705156,2705249-2705494
Length = 180
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -2
Query: 322 VGG--NSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPG 149
VGG SPCG +C CV AP D + ++ + K ++ PG
Sbjct: 6 VGGVPGSPCGACKFLRRKCAAECVFAPYFCAEDGAAQFAAIHKVFGASNAAKLLQQVAPG 65
Query: 148 PRS 140
RS
Sbjct: 66 DRS 68
>11_05_0010 -
18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -2
Query: 370 GSDAILNAIKQETNCEVGGNSPCGKF-SVSEVECLGACVNAPMIQVNDDYYEDLSVEDTK 194
G + N + Q+ + G C F SVS+ + A +++ + QV+ YE+ S K
Sbjct: 220 GKTTLANLVYQKLH----GQFECQAFVSVSQKPNVKAVLSSILCQVSQLKYENFSSWGEK 275
Query: 193 EIISKLK 173
EII K++
Sbjct: 276 EIIDKIR 282
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 220 EDLSVEDTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFGV 65
ED + + + ++ K E+PKP P + A + L G T+ FGV
Sbjct: 844 EDKATHNVTDQSMQVSKTEEPKPPPVNVTQALDALTGFDDSTQMAVNSVFGV 895
>04_04_0090 -
22747049-22747282,22747438-22747847,22748562-22748757,
22749511-22749583,22749673-22749753,22749855-22749940,
22750050-22750126,22750313-22750409,22751025-22752020,
22752882-22752926
Length = 764
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -2
Query: 202 DTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFGVQDALK 50
D +E+ K K+D++ K G + G S GG S+ EE G GV++ LK
Sbjct: 293 DRQEVKHKRKQDKRKKKGKKGGG-GSGGGGGGGSIGEE-VPKGGGVRERLK 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,159
Number of Sequences: 37544
Number of extensions: 306821
Number of successful extensions: 923
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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