Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321D04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77663-9|CAB01203.1| 239|Caenorhabditis elegans Hypothetical pr... 215 1e-56
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical ... 29 2.7
U80030-8|AAG24166.2| 375|Caenorhabditis elegans Serpentine rece... 28 3.5
Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical pr... 28 4.7
U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical p... 28 4.7
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 27 8.1
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 27 8.1
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ... 27 8.1
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z77663-9|CAB01203.1| 239|Caenorhabditis elegans Hypothetical
protein F53F4.10 protein.
Length = 239
Score = 215 bits (526), Expect = 1e-56
Identities = 97/157 (61%), Positives = 120/157 (76%)
Frame = -2
Query: 520 PISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIK 341
PISAMH+VA+IL +P+MR YEVATFYTMF R+P+GKY +QVC TTPC LRG++ I I+
Sbjct: 83 PISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETIE 142
Query: 340 QETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEK 161
++ G + G F+++EVECLGACVNAPMIQ+NDDY+EDL+ +D EI+ LK K
Sbjct: 143 KKLGIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRK 202
Query: 160 PKPGPRSGRFASEPLGGLTSLTEEPTGPGFGVQDALK 50
P GPRSGR A+EP G LTSL E P GPGFG+Q ALK
Sbjct: 203 PAAGPRSGRLAAEPFGELTSLKETPPGPGFGLQAALK 239
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 211 SVEDTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFGVQDALKA 47
++ D+ I +++K E P+ P +GR A + +PTG G G Q LKA
Sbjct: 143 AIIDSANIANRVKFPEAPRRAPSNGRPAQRAPKRQNVKSGKPTG-GAGAQKKLKA 196
>AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical
protein Y53G8AL.3 protein.
Length = 252
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 400 VCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY- 224
VC ++P L + +I+ + + G N S + GAC+ P I + Y
Sbjct: 84 VCVSSPPPLSHHSYLETSIETSKSEQCGANRKTTSMSFQKSFVTGACLTYPFIGQSLTYR 143
Query: 223 -YEDLSVEDTKEIIS 182
EDL+ +D +I++
Sbjct: 144 NQEDLAAQDYSKIMT 158
>U80030-8|AAG24166.2| 375|Caenorhabditis elegans Serpentine
receptor, class w protein112 protein.
Length = 375
Score = 28.3 bits (60), Expect = 3.5
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Frame = +2
Query: 20 YLHKTTPDLRLECILYS--------EARPCGFFSQRGQSSERLRRESS--TPGPRFGLLV 169
YL T L + C+LY E R ++ SS +++SS T F L V
Sbjct: 224 YLEGVTSKL-IPCLLYPIATVFLIIEIRKAAINRKKISSSSSSQQDSSGRTTKLIFYLTV 282
Query: 170 LL*FADNFFCIFYRQVLIVIIIDLYHWGVHTSSQTFNL*NRKLATRTVASNLTVCFLFNC 349
+ + +FY +L I+ WG +T F L T T A ++ +C L +
Sbjct: 283 IFYIGEFPMAVFY--ILNPILQMSIQWGFYTYLVYFEFLFSTLLTATTAIHMPICLLMSS 340
Query: 350 IQYGIRA 370
QY I A
Sbjct: 341 -QYKITA 346
>Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical
protein T27F6.6 protein.
Length = 434
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 21 IYTRQHQIYALSASCTPKPGPVGSS 95
+ RQ ++ L+A C P+P P+GS+
Sbjct: 34 VAARQLRVVTLNAWCLPQPWPIGST 58
>U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical
protein F37C12.13a protein.
Length = 434
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 424 PIGKYHVQVCTTTPCWLRGSDAILNAIKQETNC 326
P+ YH+ +CTT +G +++ +ET C
Sbjct: 184 PLNIYHMPICTTIGLLDKGQIVVIDPTDKETAC 216
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 39 QIYALSASCTPKPGPVGSSVSEVNPP 116
QIY+ + PKP P+G S + V P
Sbjct: 2246 QIYSSMLNLAPKPAPIGGSENHVVTP 2271
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 308 TVASNLTVCFLFNCIQYGIRASKPARSSRTYLNMVFTNWS 427
T S +T+CFLFN +R+S P +++ ++ ++S
Sbjct: 223 TWLSLVTLCFLFNAFCIPLRSSYPYQTADNWMYWFIVDYS 262
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 308 TVASNLTVCFLFNCIQYGIRASKPARSSRTYLNMVFTNWS 427
T S +T+CFLFN +R+S P +++ ++ ++S
Sbjct: 223 TWLSLVTLCFLFNAFCIPLRSSYPYQTADNWMYWFIVDYS 262
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 308 TVASNLTVCFLFNCIQYGIRASKPARSSRTYLNMVFTNWS 427
T S +T+CFLFN +R+S P +++ ++ ++S
Sbjct: 223 TWLSLVTLCFLFNAFCIPLRSSYPYQTADNWMYWFIVDYS 262
>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
protein Y46G5A.1b protein.
Length = 1021
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 244 IQVNDDYYEDLSVEDTKEIISKLKKD-EKPKPGPRSGRFASEPLGGLTSLTEEP 86
I ++ Y +D + +E +SKLK D + P PR + P L + ++P
Sbjct: 818 IAIDFGYSDDEVMHSLRETLSKLKSDRQHVPPPPRPEDLSEVPTKALGPILQKP 871
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 244 IQVNDDYYEDLSVEDTKEIISKLKKD-EKPKPGPRSGRFASEPLGGLTSLTEEP 86
I ++ Y +D + +E +SKLK D + P PR + P L + ++P
Sbjct: 818 IAIDFGYSDDEVMHSLRETLSKLKSDRQHVPPPPRPEDLSEVPTKALGPILQKP 871
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,956
Number of Sequences: 27780
Number of extensions: 270304
Number of successful extensions: 831
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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