Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321D02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    27   2.2  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    26   3.0  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    26   3.9  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   3.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   5.2  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   9.0  
SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit L2...    25   9.0  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   9.0  

>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 137 GLTGMVKKHACLDWKNTVP-DSFSGLVLPTLGA 232
           G   + K H CL + NTV  ++   L+LP +G+
Sbjct: 21  GQNAIEKSHVCLLYANTVGCEALKNLILPGIGS 53


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 175 LEKYSPRQLFW---LSAANTWCAVYRNEAIKLRITTGFHAPG 291
           L + +PRQ+ W   L  ++  C V  +EAIK   T+GF   G
Sbjct: 39  LFRKTPRQVQWQCQLHESDLSCVVTDSEAIKKFWTSGFFGKG 80


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 187 SPRQLFW--LSAANTWCAVYRNEAIKLRITTG 276
           +P  L W  + ++N+W A+YR+  +  ++  G
Sbjct: 315 APNVLIWSAVCSSNSWAAIYRSSPLLAKLPDG 346


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 278 NPVVILNLIASLRYTAHQVLAALSQKSCRGLYFS 177
           N V++L   ASL Y  + ++A   + + +GLY +
Sbjct: 145 NTVILLTSGASLTYAHYSLIARNRENALKGLYMT 178


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 473 TSDAISSHDRF*YERQQCVVLKQI-FYHTLHFLSGFIGDPIG 351
           T  AI+S+D    E+Q+C  L++I F   L  ++  +G+ +G
Sbjct: 592 TIAAIASYDSNHDEKQKCFSLREILFLRCLSSIAKVVGEKMG 633


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 19  QYSNYT-VKEVGLKLNGVNTQGENIADNGGIKEAYYAYQAWTHRHGEEARL 168
           +YS Y  V+ + +K +  +T+  N+  N  +KE     +  THR  EE  L
Sbjct: 170 EYSEYEEVESLDVK-SEKDTESNNLGQNELLKEQLATPEVETHRSKEETIL 219


>SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit
           L25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 97  NGGIKEAYYAYQAWTHRHGEEARLPGLEKYSPRQLFW 207
           NG +   YY+ +     + +EARL  L+   P+Q+ W
Sbjct: 49  NGLVINPYYSNRRQAEIY-KEARLQNLDNLLPQQMSW 84


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -1

Query: 326 SILDMGP--MTRNLPGAWNPVV 267
           +I++ GP  MTR L GAW+ ++
Sbjct: 182 NIMEAGPSSMTRQLAGAWDALI 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,086
Number of Sequences: 5004
Number of extensions: 47820
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)