Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696...    29   1.7  
10_08_0500 - 18357828-18358649                                         28   5.2  
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    27   6.9  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    27   6.9  
04_01_0394 - 5174718-5174801,5174914-5174959,5175900-5176013,517...    27   9.1  
01_03_0239 + 14084920-14085141,14085394-14085641,14086137-140864...    27   9.1  

>03_02_0952 +
           12666750-12666777,12666965-12667185,12669464-12669649,
           12670147-12670212,12670335-12670427,12670528-12670659,
           12670794-12670895,12670993-12671070,12671148-12671219,
           12672185-12672292,12672368-12672465,12672904-12672964,
           12673058-12673120,12673228-12673284,12673571-12673729,
           12674310-12674441,12674516-12674602,12674667-12674738,
           12675899-12675985,12676052-12676427,12676727-12676788,
           12676946-12677014,12677096-12677142,12677189-12677342,
           12677874-12677999
          Length = 911

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 28  NYTVKEVGLKLNGVNTQGENIAD 96
           N TVKE+G+K+NG   +G++  D
Sbjct: 716 NKTVKELGIKINGSTFRGDSFTD 738


>10_08_0500 - 18357828-18358649
          Length = 273

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +1

Query: 64  GVNTQGENIADNGGIK----EAYYAYQAWTHRHGEEARLPGLEKYSPRQLFWLSAANTWC 231
           GV  QG   A NGGI     EA  A  A   + G  A  P L +  PRQ     +ANT  
Sbjct: 58  GVQGQGYAAAANGGIGGGGVEAVNAAAA-PRQGGRHAGHPPLPRPPPRQCPRCGSANTKF 116

Query: 232 AVYRN 246
             Y N
Sbjct: 117 CYYNN 121


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 336 GKFFHIRHGANDAESSGGMESSCDSQLDCLIAVHC 232
           G+ F  RH  NDA +SG   + C   ++ ++ + C
Sbjct: 48  GEVFACRHCHNDATASGDRHTICRQDVEKVVCLLC 82


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 225  SVGSTKPEKLSGTVFFQSRQACFFTMPVSPGL-IRVVSFFDAS 100
            S+GS+K  K     FF+ R  CF  +P++  + + V ++F+ S
Sbjct: 1761 SLGSSKDRK-----FFEGRAFCFLPLPINTSMPVHVNAYFELS 1798


>04_01_0394 -
           5174718-5174801,5174914-5174959,5175900-5176013,
           5176323-5176441,5176518-5176589,5176733-5176873,
           5177016-5177096,5177378-5177479,5177828-5177865,
           5177985-5178087,5178223-5178345,5181004-5181117
          Length = 378

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 194 DSFSGLVLPTLGAQCTAMRQSS*ESQLD 277
           DS+SG+++PTL  +    ++SS E  L+
Sbjct: 97  DSYSGIIIPTLTMEIAKGKESSDERHLN 124


>01_03_0239 +
           14084920-14085141,14085394-14085641,14086137-14086461,
           14090401-14090658
          Length = 350

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 277 FHAPGRFRVIGPMSNMEEFASD 342
           FH+P +  ++GP+S M E   D
Sbjct: 293 FHSPSKNAIVGPLSEMVEHEDD 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,621,501
Number of Sequences: 37544
Number of extensions: 314401
Number of successful extensions: 791
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)