Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...   108   4e-25
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.42 
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   1.7  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   3.0  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    25   5.2  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   5.2  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   5.2  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    25   6.8  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.0  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score =  108 bits (260), Expect = 4e-25
 Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 1/126 (0%)
 Frame = +2

Query: 146 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELR 325
           +L ++++ +D+ KD +   L  AV+IPSVS DV  R   + M  ++  +  ++GA  E R
Sbjct: 2   SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKR 61

Query: 326 DVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERN 502
           D+G+  +DG+DV           NDP K TV IY H DVQPA   DGW T+PF L V+  
Sbjct: 62  DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 121

Query: 503 EKLYGR 520
            +++GR
Sbjct: 122 GRMFGR 127


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
 Frame = -3

Query: 504 SLRSTSSKGSVSHPSDFKAGCTSK*P*IQTVFFFGSLPNTPTKTGGS*TSLPSIV*KPTS 325
           S  STSS  S S  S   +  +S    I +     S  ++PT T  + +S  S    PTS
Sbjct: 246 SSSSTSSSLSSSSSSSTASSSSSSSSIISSS---SSSSSSPTSTSSTISSSSSSSSSPTS 302

Query: 324 LNSVVAPTSFNLSCIQ*TI---RMQSARYFTSHETDGMATAS 208
            +S ++ +S + S    T+    M S+  F+S  T   +T S
Sbjct: 303 TSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +2

Query: 23  CIFNTLIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATE-KTLPEIFKYVDQNKDSYKQ 199
           C  NT+  L +    + FF A +     S  Q+S   AT   +L  IF   D   D   +
Sbjct: 755 CNLNTMEALASVNTALQFFSALNYSECFSESQISPLHATVISSLSAIFIRDDTENDLVTE 814

Query: 200 LLKEAVAIPSVSCDVKYRADCIRMVHWM 283
           L+++           +Y A C++++ W+
Sbjct: 815 LVEKLFLFK------QYNA-CMQLIGWL 835


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 449 QVVHPNDHRYKLYFFLDHYPIR 384
           ++V P D   + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 455 SKQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERL-CHLLFESQH 327
           SK+ VHPNDH        D +P  ++ +A+V ++  HLL   +H
Sbjct: 141 SKKPVHPNDHVNMSQSSNDTFP-TVMHIASVLQIHTHLLPAMKH 183


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 494 QLVQKVQSPIHQISKQVVHPNDHRYKLYFFLDHYPIRLLKLAA 366
           ++VQK  S +H+++K++     H  +L  F   Y + LL++ A
Sbjct: 538 EIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYA 580


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 401 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 511
           P    + I    DV+P LKS   +  P E   R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 413 YFFLDHYPIRLLKLAAVERLCHLLFESQHPLTL 315
           Y F DH P  LL L A+      LF++Q  LTL
Sbjct: 93  YGFQDHNPPPLLFLWAIVMNMDALFQTQPLLTL 125


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 275 HWMQDKLKEVGATTELRDVGFQ 340
           +W+QDKLK    T   R+ G Q
Sbjct: 190 NWLQDKLKHYLTTCLCRETGVQ 211


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
 Frame = -1

Query: 521 LVHIIFHCAQLVQKVQSPIHQISKQVVHPND--HRYKLYFFLDHYPIRLLKLAAVERLCH 348
           +VH IF     +     P++ +  +    +   H    YF  D+  +++  +     L  
Sbjct: 602 IVHFIFSVFTFIYFSLVPLNNLFHRAYKSSSRTHLANRYFTADYARLQINDMCVSWGLWL 661

Query: 347 LLFESQHPLTL*WLRL----PSICLASSEPYGCNPHDISHHM 234
           L+F ++   +  +L L    P + L++ +PY CN   +  H+
Sbjct: 662 LVFGAKFTESYFFLSLSFRDPILVLSTMKPYLCNITFLGSHL 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,756
Number of Sequences: 5004
Number of extensions: 46459
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)