Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    27   1.7  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   2.2  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   6.8  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   6.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   9.0  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   9.0  

>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 358 EGCQERDGEHCGHSSYHHPSFLSVSARSPERLLYVV 251
           + C E   + C     H   F+  + + PERL+ VV
Sbjct: 30  QACSEEYAKQCEREVLHTVDFIRENEKDPERLVEVV 65


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 506 YGYTQVRYTFPRHLIP-GRPLQV 441
           YGY  +++T+P H +  G+P +V
Sbjct: 361 YGYDNLKHTYPAHSVTFGKPFEV 383


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 336 PSRSWQPSSPAFSYEQPAT 392
           P R W P +P    EQP T
Sbjct: 36  PERKWDPKAPKHIQEQPWT 54


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 251 FSCCSSSEYILRPHSLNLWWVVLLVIGKC 165
           ++CC +    + P++L L++   L++ KC
Sbjct: 170 YACCMALTVFINPNALLLFFPSYLILRKC 198


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 516 LEAVWIHPGALHVSTSSDP 460
           L+A W+HP  L +    DP
Sbjct: 694 LQANWLHPSTLELKPDDDP 712


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 175 ITNKTTHHRFNECGRRI-YSDELQHEKQR 258
           +TN+T+ H+FNE  R   +S   +H   R
Sbjct: 6   LTNRTSTHKFNETDRETNHSRRHRHHHSR 34


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 113 TPDRHTRAGIRRMSTT*YICRSPTKLPTTGSMSVDAEYIPTNYNMRN 253
           TP   T   I++ S       SP   P+    +   +  P NYN+RN
Sbjct: 131 TPANETVPRIKQPSIALDSLESPVSAPSRHQSTYSYKGGPLNYNLRN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,884
Number of Sequences: 5004
Number of extensions: 46593
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)