Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321C12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 29 2.3
01_06_0318 - 28434817-28435197,28435333-28435461 28 4.0
05_03_0464 + 14350391-14350520,14350609-14351342,14351421-143518... 28 5.2
01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030... 28 5.2
08_01_0135 + 1068948-1069730 27 6.9
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 27 6.9
02_05_0875 + 32393496-32393881,32395297-32395397,32395493-323956... 27 6.9
12_02_0221 - 15855479-15855517,15855745-15856033,15856118-158562... 27 9.1
11_01_0182 + 1437110-1438984 27 9.1
09_01_0019 + 403078-404211 27 9.1
01_01_1196 - 9626155-9626386,9626709-9626917,9627041-9627172 27 9.1
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 27 9.1
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 425 LSSSMPPAVVARGSDDVETCSAPGCIHT 508
L + PAV+ G + VE+ +APGC T
Sbjct: 56 LEAKPDPAVLGEGGEAVESNAAPGCAET 83
>01_06_0318 - 28434817-28435197,28435333-28435461
Length = 169
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -1
Query: 254 CFSCCSSSEYILR--PHSLNLWWVVLLVIG--KCITWSTCGGYRRVCD 123
C C + +++L P S LWWV L IG +C+ + + +CD
Sbjct: 112 CDQCEETIDHLLVACPESQQLWWVALRAIGHSECLPLNEHSFFSWLCD 159
>05_03_0464 +
14350391-14350520,14350609-14351342,14351421-14351882,
14351964-14352796,14352879-14352948,14352964-14353049,
14353129-14353429
Length = 871
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 305 SIVSQRQCEVARTIALRCFSCCSSSEYILRPHSLNLWWVVLLVIGK 168
S+V++ EV + RC EYI+ H+ W++L+++ K
Sbjct: 739 SMVNESSTEVVDYVN-RCLWAHQDKEYIMCAHNQERHWILLVIVPK 783
>01_06_1743 +
39601644-39602023,39602301-39602734,39602828-39603006,
39603636-39603716,39603828-39603914,39604000-39604006,
39604241-39604312,39604712-39604792,39605156-39605262
Length = 475
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 310 DSWSGRSARRRVLGSLHRQPSPTNNQRHKRHAT 408
D++S SA RR S P+ H+RHA+
Sbjct: 185 DAFSSSSAYRRAASSASTSPTSAAKPHHRRHAS 217
>08_01_0135 + 1068948-1069730
Length = 260
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 142 PPHVDHVIHLPITNKTTHHRFNECGRRIYSDELQHE 249
PP V + L T + H R G R Y D L+H+
Sbjct: 40 PPPVAFAVPLSPTPPSPHIRMRRAGFRSYEDYLRHQ 75
>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = -1
Query: 257 RCFSCCSSSE-----YILRPHSLNLWWVVLLVIG--KCITWSTCGGYRRVCDGQ 117
RC C E I P S LWWVVL IG +C+ + Y +C+ +
Sbjct: 1272 RCVLCDQHEETIDHILIACPESRQLWWVVLSSIGLPQCLPLNEDSFYLWLCNSR 1325
>02_05_0875 +
32393496-32393881,32395297-32395397,32395493-32395674,
32396135-32396233,32396311-32396403
Length = 286
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 124 TVRSTRSRARQYHASDYRPANRLNFGNK 41
T+ + R R Y D +PANR GNK
Sbjct: 225 TLTAIRDWFRDYKIPDGKPANRFGLGNK 252
>12_02_0221 -
15855479-15855517,15855745-15856033,15856118-15856288,
15856367-15856572
Length = 234
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 242 CSSSEYILRPHSLNLWWVVLLVIGKCITWSTC 147
C EYI+ ++ W++L++ K WSTC
Sbjct: 113 CRDKEYIMCAYNQYAHWILLVITPK---WSTC 141
>11_01_0182 + 1437110-1438984
Length = 624
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 377 RTTSDISDMPQTSELRLSSSMPPAVVARGSDDVETCSAPGCIHTASRL 520
R S + +P L LSS +PP S + S+PGC+ +A L
Sbjct: 78 RLASPLLPVPHRLRLLLSSPLPPTTFLANS-FLLASSSPGCLPSALSL 124
>09_01_0019 + 403078-404211
Length = 377
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 229 SDELQHEKQRKAIVLATSH*R*ETMDDDSWSGRSARRR 342
SD+ +H K RK SH R + D+ SG RRR
Sbjct: 271 SDKKRHRKSRKDRKRRRSHRRSDDTSDEDESGGEDRRR 308
>01_01_1196 - 9626155-9626386,9626709-9626917,9627041-9627172
Length = 190
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 268 VLATSH*R*ETMDDDSWSGRSARRRVLGSLHRQPSPTNNQRHKR 399
+L T H M+D S SGR+ RR G P ++ +R KR
Sbjct: 95 LLQTKHQFVVVMEDASSSGRTTTRRSSGGDDGSPGGSDRKRMKR 138
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 91 TDVHETVYS*PSHTRRYP--PHVDHVIHLP 174
+DVH+ ++ P+ T +YP PH+ LP
Sbjct: 1390 SDVHQVIFHVPNLTEKYPIQPHISKEDKLP 1419
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,200,784
Number of Sequences: 37544
Number of extensions: 353586
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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