Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321C12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical pr... 29 1.5
U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical pr... 29 1.5
M77697-1|AAA27896.3| 273|Caenorhabditis elegans Hypothetical pr... 29 2.7
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical p... 27 6.2
U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein. 27 6.2
U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein. 27 6.2
AC084158-39|AAM15616.2| 483|Caenorhabditis elegans Hypothetical... 27 6.2
AC084158-38|AAM15617.2| 488|Caenorhabditis elegans Hypothetical... 27 6.2
AC084158-37|AAM15615.2| 486|Caenorhabditis elegans Hypothetical... 27 6.2
>U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical
protein F14B8.5a protein.
Length = 537
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 241 QHEKQRKAIVLATSH*R*ETM-DDDSWSGRSARRRVLGSLHRQPSPTNNQRHKRHATN 411
QH+K+R A + H + + ++ WS +A+R+ +G LH Q N+ ++ H TN
Sbjct: 434 QHDKKRAA---GSDHGSDQPLITNEEWSSTTAKRKPVGILH-QTQNQNHLINQNHQTN 487
>U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical
protein F14B8.5b protein.
Length = 501
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 241 QHEKQRKAIVLATSH*R*ETM-DDDSWSGRSARRRVLGSLHRQPSPTNNQRHKRHATN 411
QH+K+R A + H + + ++ WS +A+R+ +G LH Q N+ ++ H TN
Sbjct: 398 QHDKKRAA---GSDHGSDQPLITNEEWSSTTAKRKPVGILH-QTQNQNHLINQNHQTN 451
>M77697-1|AAA27896.3| 273|Caenorhabditis elegans Hypothetical
protein B0303.2 protein.
Length = 273
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -2
Query: 154 RHAADTGACVTVR---STRSRARQYHASDYRPANR 59
R D GA TV S R RA + SDY PANR
Sbjct: 68 RSVLDLGAGPTVYLPISLRDRAENIYTSDYAPANR 102
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 384 PAT*ATCHKLVN*DFLHPCHLQWSPGDQMTWKR 482
P+ A HK V D + C + +P ++TW R
Sbjct: 45 PSKNAIIHKKVGADLIFECKAEGAPSPEITWSR 77
>Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical
protein C50H2.3 protein.
Length = 838
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 173 GKCITWSTCGGYRRVCDGQEYTVS 102
G+CI C GY+ VCD + V+
Sbjct: 195 GECIDIDECRGYKAVCDRNAWCVN 218
>U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 173 GKCITWSTCGGYRRVCDGQEYTVS 102
G+CI C GY+ VCD + V+
Sbjct: 195 GECIDIDECRGYKAVCDRNAWCVN 218
>U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 173 GKCITWSTCGGYRRVCDGQEYTVS 102
G+CI C GY+ VCD + V+
Sbjct: 195 GECIDIDECRGYKAVCDRNAWCVN 218
>AC084158-39|AAM15616.2| 483|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1b protein.
Length = 483
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 172 ANVLRGRHAADTGACVTVRSTRSRARQYHASDYRPANRLNFGNKQ 38
AN +RG +A V VR+ RA +Y + A +++ GN+Q
Sbjct: 339 ANKMRGAYATGERVYVCVRNDLRRAFKYSLAMPATAFKMSIGNEQ 383
>AC084158-38|AAM15617.2| 488|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1c protein.
Length = 488
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 172 ANVLRGRHAADTGACVTVRSTRSRARQYHASDYRPANRLNFGNKQ 38
AN +RG +A V VR+ RA +Y + A +++ GN+Q
Sbjct: 344 ANKMRGAYATGERVYVCVRNDLRRAFKYSLAMPATAFKMSIGNEQ 388
>AC084158-37|AAM15615.2| 486|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1a protein.
Length = 486
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 172 ANVLRGRHAADTGACVTVRSTRSRARQYHASDYRPANRLNFGNKQ 38
AN +RG +A V VR+ RA +Y + A +++ GN+Q
Sbjct: 342 ANKMRGAYATGERVYVCVRNDLRRAFKYSLAMPATAFKMSIGNEQ 386
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,916
Number of Sequences: 27780
Number of extensions: 278697
Number of successful extensions: 750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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