Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    34   0.071
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    31   0.66 
Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41016-5|AAP46274.1|  811|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF067216-2|AAC17527.2|  343|Caenorhabditis elegans Hypothetical ...    28   4.7  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    27   6.2  
Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U00063-2|AAK18961.1|  329|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF078790-15|AAC26929.2|  352|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 353 QRSRTLGTLCLHTSCTQVYSCDLRNPFYSLFQ 448
           Q SR+ GT    T C++VY C L +P + L+Q
Sbjct: 49  QVSRSFGTFVHRTLCSKVYYCALHDPVWELYQ 80


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +3

Query: 69  PPAASVSYSSISTPINGKTIINPSTEVRRRINFYKTVEPAPVHETFSDHNNAGNAYFSSL 248
           PP +S++  SIS+   G +I  PST      +   T  P+    + +      NA  SSL
Sbjct: 200 PPLSSIT--SISSSAAGSSISAPSTSQPSTTSSLITSPPSTSSSSMAPRKTPPNASSSSL 257

Query: 249 HK-QNLDYYNHQNYDTPVYLNTYQ 317
            K Q+ D    Q  D  V  N  Q
Sbjct: 258 IKRQSQDVQEQQRVDFEVARNVSQ 281


>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 255 QNLDYYNHQNYDTPVYLNTY-QHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVTFATH 431
           Q+L  +  Q  ++  +++ + Q  P    P    ++H P+VH    + A  S+  +FA +
Sbjct: 410 QHLQKFAKQQAESGQHIHHHRQPTPPNGGPQHQQHLHHPMVHPGMQIIADPSLLASFAQN 469

Query: 432 SIPYSKTSYLSDTRSAPTEPSLFAQSGQ 515
             P    +Y+ +        ++ A +GQ
Sbjct: 470 --PVILNAYVENQLQEAVNAAIRANNGQ 495


>U41016-5|AAP46274.1|  811|Caenorhabditis elegans Hypothetical
           protein R11G1.6c protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 309 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 419
           T    PI ++PH+N + H P+V S +T    K++  T
Sbjct: 466 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 501


>U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical
           protein R11G1.6d protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 309 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 419
           T    PI ++PH+N + H P+V S +T    K++  T
Sbjct: 466 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 501


>U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical
           protein R11G1.6b protein.
          Length = 901

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 309 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 419
           T    PI ++PH+N + H P+V S +T    K++  T
Sbjct: 556 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 591


>U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical
           protein R11G1.6a protein.
          Length = 899

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 309 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 419
           T    PI ++PH+N + H P+V S +T    K++  T
Sbjct: 556 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 591


>Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical
           protein C50H2.2b protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/51 (19%), Positives = 28/51 (54%)
 Frame = +3

Query: 186 APVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFN 338
           +P+H   S H+   +++ +++HK N+D  ++ + +  + L+   +  +  N
Sbjct: 8   SPLHIDLSQHHPDNHSHRNNIHKPNMDNLDNSDVENALILDNLDNHHMTSN 58


>AF067216-2|AAC17527.2|  343|Caenorhabditis elegans Hypothetical
           protein C35E7.8 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 264 QGFVCGAMKSKHFQHYC-GRKTFRVQEPVRLFCKNLYVF 151
           Q  +C A+ SKHF   C G   F     V +  K+  VF
Sbjct: 149 QAAICAALNSKHFMMICVGIDAFNAVTGVEMSAKDRVVF 187


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
 Frame = +3

Query: 186 APVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYDTPVYLNTY------QHEPIGFNPHE 347
           APV   +S+ N + +AY S   +        QNY +  Y  +Y      QH+P     + 
Sbjct: 564 APVSNNYSNQNYSSSAYNSQSSQHQTKSIPVQNYQSSNYNKSYSSQTTTQHQPQPVAANN 623

Query: 348 NINVHGPLVHSVSTLAAHKSIPVTFATHSIPYSKTSYLSDTRSAPTEPSLFAQSGQS 518
           N +       S +T A     P T A    P + +S+ ++T S+     + +  G S
Sbjct: 624 NYSTSYHTERSSTTTAQQ---PQTIALPP-PQNNSSH-TETHSSTGPIMMHSPGGHS 675


>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = +3

Query: 189 PVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNY--------DTPVYLNTYQHEPIGFNPH 344
           PV E+    +N  +++  ++ K   +Y NH+N         D   +L  +Q +  G +  
Sbjct: 107 PVKESSKPSSNPCDSFRQAIAKTPSEYLNHENVQFIVSVFGDATCFLKAFQSQFNGNSRK 166

Query: 345 ENINVHGPLVHSVSTLAAHKSI 410
           ++   +G LV+S  T + ++SI
Sbjct: 167 KSFFYNGILVNSNLTNSNNQSI 188


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/77 (19%), Positives = 32/77 (41%)
 Frame = +3

Query: 180 EPAPVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFNPHENINV 359
           +P P H   +  +   +  +S+LH +     +  NY+    L+          PH  +N 
Sbjct: 99  QPIPSHRHSASGSRRQSRVYSNLHSKRKRSNSLTNYNKGQSLSVSLPPSARHTPHRFVNE 158

Query: 360 HGPLVHSVSTLAAHKSI 410
                +S+++  +H S+
Sbjct: 159 EDAFRNSMASSDSHSSV 175


>U00063-2|AAK18961.1|  329|Caenorhabditis elegans Hypothetical
           protein F56C9.6 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 207 SDHNNAGNAYFSSLHKQNLDYYNHQN 284
           S+H+++G++YF++ HK   +Y    N
Sbjct: 147 SEHSSSGDSYFNNSHKTTPNYRRFAN 172


>AF078790-15|AAC26929.2|  352|Caenorhabditis elegans Hypothetical
           protein F36H12.2 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = -3

Query: 291 YRSFDGCNNQGFVCGAMKSKHFQHYC-GRKTFRVQEPVRLFCKNLYVF 151
           Y +      Q  +C A+ SKH+   C G   F     V +  K+  VF
Sbjct: 109 YENMSTFELQAAICAALNSKHYMMICVGIDAFNAVTGVEMSAKDRVVF 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,102,342
Number of Sequences: 27780
Number of extensions: 264799
Number of successful extensions: 863
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)