Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321C09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 31 0.14
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 27 1.7
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 26 3.9
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 3.9
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 3.9
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 26 3.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 5.2
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 5.2
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 5.2
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 5.2
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 25 9.0
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 9.0
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 50 SSIKWFELQLTYFSTSKQQVCRFKKEIKLRSPNYVFWQCLEMI*IHNQVCHPLRSC 217
S +++E T +T + + K+ IKL + NYVFW L ++ + + C
Sbjct: 897 SYYRFYECDTTKDATLQVAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHC 952
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 283 ESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDY 399
ESL N TF + N I ++ P + H NS+++
Sbjct: 671 ESLNNLSTFSELLNIIDGLSSDSRSPKTVGTHESNSYEF 709
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 301 AHSLVTHSLGQSKLQHQDEFSFLGSVRKT 215
AHSLV H++G KL + F+ ++ T
Sbjct: 30 AHSLVAHNIGHIKLDPNEGLFFVDNLVNT 58
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 376 HNGNSFDYKILLAECNDAGILLPSDLLC--IDSLIGFRKILKTT 501
H+G ++ + E + G L DL + LIGFRK L +T
Sbjct: 149 HSGTIAQWRDTIEEIHRRGFYLVLDLTISTLGDLIGFRKYLNST 192
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 388 SFDYKILLAECNDAGILLPSDLLCIDSLIG 477
SFD +L+ GIL+ +DLL I S G
Sbjct: 475 SFDRTLLILPGGSTGILIINDLLVIRSFAG 504
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 135 SFISFLKRQTCCFDVEKYVSCNSNHFM 55
SFI +++ Q C D+E Y+ NHF+
Sbjct: 356 SFIIYIQMQLCFDDLESYL-IRRNHFL 381
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.4 bits (53), Expect = 5.2
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Frame = +1
Query: 76 TYVFFDIETTGLP--FQERNKTKITELCFLAVSRDDLDTQSGLPPIKKLSFVLNPEKRIH 249
T + FDIETT LP F + + KI + ++ + L T + F P +
Sbjct: 271 TIMAFDIETTKLPLKFPDSSFDKIMMISYMIDGQGFLITNREIISQNIEDFHYTPREEFE 330
Query: 250 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 429
++ L + FK +A KP +V +NG+ FD+ + A
Sbjct: 331 GPFIIFNEPDEVGLLHR-FFKHIRSA---------KPSVIVTYNGDFFDWPFVDARAAFH 380
Query: 430 GILLPSD 450
G+ L +
Sbjct: 381 GLNLTEE 387
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 145 ELCFLAVSRDDLDTQSGLPPIKKLSFVLNPEKRIHP 252
E FL S LD +G P ++L+F ++ HP
Sbjct: 225 EFMFLPSSPPGLDEINGAPSFEELNFQISQPSPAHP 260
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 20 NKTEVGSSKRSSIKWFELQLTYFSTSKQQVCRFKKEIKLRSPNYVFWQCLEM 175
NKT SK SS+ W E + + C K+ LR P+ CL M
Sbjct: 16 NKTGSSPSKASSLNWNE---PHTLNEQNTYCYCGKDRNLRFPDLQCSVCLNM 64
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 5.2
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 298 HSLVTHSLGQSKLQHQDEFSFLGSVRKTTS*WVADLI--VYLDHL*TLPKNIIR*S*FYF 125
H +T LG S + D + VRK WV+DLI D + + S F
Sbjct: 169 HETITGWLGDSHVNLPDIRTEKNEVRKFFQNWVSDLIKRYQFDGIRLDTAKHVEKSFFPT 228
Query: 124 FLETANL 104
F+E AN+
Sbjct: 229 FIEAANV 235
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 359 GFGSSFKKDTIAFALCLNVGAFFSDSFVRPVKTTTS 252
GFGSS ++ N G+ S S + P ++TTS
Sbjct: 125 GFGSSMLGSSLPGNATSNFGSQASTSLLHPRRSTTS 160
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +1
Query: 145 ELCFLAVSRDDLDTQSGLPPIKKLSFVLNPEKRIHPDVVVLTGLTNESLKNAPTFKQRAN 324
+LC LAV+ D++ P ++ L+ R++ + L ++LK+ + ++A
Sbjct: 86 DLCILAVNTFVKDSEEYNPTLRALAIRTMGCIRVNKIIGYLADPLRKALKDEHPYVRKAA 145
Query: 325 AI-VSFLNELPKPICLVAHNGNSFDYKILLAECN 423
A+ V + +L + C A NG + L+++ N
Sbjct: 146 AVCVVKMYDLDREYC--ASNGFIEQLQALVSDPN 177
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +2
Query: 32 VGSSKRSSIKWFELQLTYFSTSKQQVCRFKKEIKLRS 142
+ ++ ++S++ + +L YF+ SK ++ ++ IKL S
Sbjct: 180 IDNALQASLQKYWKELQYFNVSKDKLLSLEESIKLLS 216
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 245 ILFSGFSTKDNFLMGGRPDCVSRSSLDTAKKHNSVILVLFLS*NGKPVVSMS 90
IL S S+ ++FL G SRS AK+H + + + + G PV+S++
Sbjct: 341 ILTSACSSGNSFLFAG-----SRSIYSLAKEHQAPKIFKYCNRWGVPVISVA 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,475
Number of Sequences: 5004
Number of extensions: 42682
Number of successful extensions: 113
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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