Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321C09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044 46 2e-05
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808... 42 2e-04
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 30 0.98
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 29 1.7
04_03_0622 + 18106448-18106508,18107431-18108281 27 6.9
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769... 27 6.9
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 27 9.1
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 27 9.1
>04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044
Length = 260
Score = 45.6 bits (103), Expect = 2e-05
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Frame = +1
Query: 58 KMVRVTTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDTQSGLPPIKKLSFVLNPE 237
++ T + FD+ETTG F + ++ LC L+ ++ ++NPE
Sbjct: 55 EVAAAATILVFDLETTGY-FHKDHRIVEFALCDLSGGKNST-----------FETLVNPE 102
Query: 238 KRIHPDVV---VLTGLTNESLKNAPTFKQRANAIVSFLN--ELP-KPICLVAHNGNSFDY 399
+ + PD V + G P F +++F+ + P KP+ VAHN FD
Sbjct: 103 RTV-PDYVEHLIKIGTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDA 161
Query: 400 KILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQK 507
+ L E + LP+D L D+L+ +K++K K
Sbjct: 162 RFLAQEFDRCSAPLPADWLFFDTLLLAKKMVKAEGK 197
>03_02_0708 +
10577931-10579511,10579613-10579706,10580694-10580856,
10581286-10581491,10581854-10582062
Length = 750
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +1
Query: 223 VLNPEKRIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFL---NELPKPICLVAHNGNSF 393
++NPE+ I V + + P F++ ++ ++ KP+ VAHNG SF
Sbjct: 586 LINPEREIKNAYVHGISSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSF 645
Query: 394 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 513
D L+ E + I +P D L +D+L R+++ + + L
Sbjct: 646 DVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIGSDGEKL 685
>12_01_1031 -
10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 127 NKTKITELCFLAVSRDDLDTQSGLPPIKKLSFVLN--PEKRI 246
N +I + + +S+DDLDT GL + LS ++ P +RI
Sbjct: 721 NNLRILNIAVMQISQDDLDTLKGLGSLTALSLLVRTAPAQRI 762
>06_01_0801 -
5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +1
Query: 148 LCFLAVSRDDLDTQSGLPPIKKLSFVLNPEKRIHPDVVVLTGLTNESLKNAPTFKQRANA 327
L FLA LD Q+ L +++ +++ +KR+ D++ L G ++ P F+ ++
Sbjct: 101 LGFLADRTRKLD-QAALETEARITPLIHEKKRLFNDLLTLKGNVKVFCRSRPLFEDEGSS 159
Query: 328 IVSF 339
+V F
Sbjct: 160 VVEF 163
>04_03_0622 + 18106448-18106508,18107431-18108281
Length = 303
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 205 IKKLSFVLNPEK-RIHPDVVVLTGLTNESLK 294
+K +S L PE + D++ TG T+ESLK
Sbjct: 261 LKSISLWLKPEHYNVGDDIIFRTGFTDESLK 291
>01_05_0215 +
19374279-19374327,19374629-19374633,19376902-19376956,
19377159-19377334,19378020-19378241,19378334-19378572,
19379201-19379726,19379801-19380074,19380524-19381187,
19381604-19381832,19381924-19382190,19382308-19382496,
19382664-19383308
Length = 1179
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 362 IGFGSSFKKDTIAFALCLNVGAFF 291
+GFG SF A+ALC VGA F
Sbjct: 866 LGFGFSFLVFYFAYALCFYVGAKF 889
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 103 TGLPFQERNKTKITELCFLAVSRDDLDTQSGLPPI 207
T +PF+ R K + F + DD +GLPP+
Sbjct: 154 TYIPFKGRVNLKKPDHKFFVMETDDYGCNNGLPPV 188
>01_06_0371 + 28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 362 IGFGSSFKKDTIAFALCLNVGAFFSDSFVRPVKTT 258
+GFG SF + + LC VGA FVR KTT
Sbjct: 936 LGFGFSFLMLYLTYGLCFYVGA----QFVRHNKTT 966
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,748
Number of Sequences: 37544
Number of extensions: 237083
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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