Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C09f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   4.7  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    23   8.2  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   8.2  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = +1

Query: 337 FLNELPK------PICLVAHNGNSFDYKILLAECNDAGILLP 444
           F+N LPK      PI    H+ ++   + +L  CN  G  +P
Sbjct: 344 FINHLPKLLVMRRPIYQPLHHFSAASQRFMLRSCNSLGDHIP 385


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 111 QTCCFDVEKYVSCNSNHFMD 52
           Q  CFDVE ++   S +F D
Sbjct: 48  QDPCFDVEGFIEMMSAYFND 67


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 463 LCTVSHLATKCLHRCTLLIISYNRMN 386
           L TV H     L+   LL + YNR++
Sbjct: 393 LSTVDHFTFSGLNSLALLSLDYNRIS 418


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,609
Number of Sequences: 2352
Number of extensions: 10803
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)