Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321C08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 236 1e-63
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 43 3e-05
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 43 3e-05
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 30 0.18
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.42
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.56
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 1.7
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.9
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 26 3.9
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 5.2
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 5.2
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 6.8
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 9.0
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 9.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 9.0
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 9.0
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 9.0
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass... 25 9.0
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 25 9.0
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 236 bits (578), Expect = 1e-63
Identities = 109/175 (62%), Positives = 142/175 (81%), Gaps = 2/175 (1%)
Frame = +2
Query: 2 EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETS 181
+E+E R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+IR+ D TIQVYEETS
Sbjct: 19 DEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQDKCTIQVYEETS 78
Query: 182 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 361
G+TVGDPV RTGKPLSVELGPG+ +I+DGIQRPLK I + +QSIYIP+GIN SL RE
Sbjct: 79 GLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPRGINTESLNREH 138
Query: 362 DWEFNP-LNVKVGSHITGGDLYGIVHENTLVK-HRMLVPPKAKGTVTYIAPAGNY 520
W+F P ++++G H++GGD++G V EN+L H++++PP+A+GTVTYIA AG+Y
Sbjct: 139 KWDFTPNKDLRIGDHVSGGDVFGSVFENSLFNDHKIMLPPRARGTVTYIAEAGSY 193
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 42.7 bits (96), Expect = 3e-05
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Frame = +2
Query: 20 FGYVFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGVT 190
+ V +++GP+V + + E+V + + G+++ + G A +QV+E TSGV
Sbjct: 24 YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVD 83
Query: 191 VGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL-KDINELTQSIYIPKGINVPSLAR 355
V + TG + + + +LG +F+G P+ K N L + G + AR
Sbjct: 84 VRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYAR 140
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 42.7 bits (96), Expect = 3e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 140 EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIY 319
E + TI + + T G+ G V+ TG P+S+ +GPG LG I + I P+ + + Y
Sbjct: 102 ENTVRTIAM-DGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKY 160
Query: 320 IPKGINVPSLARE 358
P + PS +
Sbjct: 161 SPIHADAPSFEEQ 173
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 30.3 bits (65), Expect = 0.18
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = +2
Query: 8 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 187
+EE VF++ +++ ++S + +Y +V V G + + Q+ E+
Sbjct: 201 DEEDIALVFSLLNCIISYGRISSAVLYSIVEVVCRAKFGLVA---SSQSAQQIVEKLLKT 257
Query: 188 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 361
L + K + E G +I GIQ ++ +S+Y +G+ + L R +
Sbjct: 258 ATKYEALNSLKRIMEETDEGSYIAIMGGIQIVSALFTDIPRSVYCTRGMLLGFLQRSL 315
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.42
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 206 VLDHLQLHLKFLRIPGWWPC 147
V+D L + LR+P WWPC
Sbjct: 67 VVDISNLVIYALRVPNWWPC 86
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.56
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 273 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 178
IPS + P P T GFP R PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta
subunit |Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 81 ADPDIFSAVTTGPDTAKTYPN 19
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 140 EGDMATIQVYEETS-GVTVGDPVLRTGKPLSVE 235
E D A++ + T+ +T DPV + KPL++E
Sbjct: 572 ENDKASVSITTTTTPSITPADPVPTSPKPLAIE 604
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -3
Query: 492 TVPLALGGTNILCLTRVFSCTIPYKSPPVMWDPTLTFNGLNSQS 361
TVP T + S ++PY S PV P T N S S
Sbjct: 412 TVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 239 GPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWEFNPLNVKVGSHITGGD 418
G ++ S+ + R LKDI T+++ + S A ++D + P+ K SH+
Sbjct: 264 GQELIPSVIGPMARSLKDIEFFTETV-------IASEAWKIDSKLLPIPWKNQSHLKSKK 316
Query: 419 L-YGIVHENTLVK 454
L +G++ + +VK
Sbjct: 317 LIFGVLKTDGIVK 329
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 176 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 304
TS +TVGD V+ + + LGS++ +++ D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 139 KTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGEDISEPLLI 8
+T +L E DTD+ VHS+S GS+ S D E +I
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSII 221
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 393 TLTFNGLNSQSTSLAREGTLI 331
T FNGL + TSLA + TL+
Sbjct: 24 TFGFNGLGTSRTSLAPQRTLV 44
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 375 TH*MLRSDPTSPVEICMVLYMRTLW 449
TH L S+ S +EI + Y + LW
Sbjct: 443 THSKLSSEDLSSIEIVFIWYAQILW 467
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 210 RSTGSPTVTPEVSSYT 163
RS G+PT PE +YT
Sbjct: 1553 RSLGTPTALPETQTYT 1568
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 246 PGPSSTDKGFPVRSTGSPTVTPEVSS 169
P PS FP ST +P+ P +S
Sbjct: 378 PNPSVASPAFPNSSTSNPSTAPASAS 403
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 97 DQLVHSRSGHFFGSDDGSRYGED 29
D L+ ++ GHFF +D G G D
Sbjct: 661 DNLLITKDGHFFHADFGYILGRD 683
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 354 GRSTGNLTH*MLRSDPTSPVEIC 422
GR+ L H +LR D T+ E+C
Sbjct: 167 GRTKQELAHELLRRDMTAVAELC 189
>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 24 DMSSPYLDPSSLPKKCPDLLCTSWSVSVTMNSSVRLSV 137
D +SP LD SL + ++L TSW +N SV + +
Sbjct: 32 DFTSPKLDEFSLIMENGEILLTSW-----LNRSVHIEI 64
>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
assembly of the V-ATPase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 188 TVGDPVLRTGKPLSVELG 241
T DPVL++ + L++ELG
Sbjct: 158 TTNDPVLQSNEQLAIELG 175
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -2
Query: 310 LSQLVDVLEGTLNTVKDGTQD 248
+S+ +D+L+ NT+K+G Q+
Sbjct: 55 ISEFMDILQNGSNTLKEGVQN 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,697
Number of Sequences: 5004
Number of extensions: 50191
Number of successful extensions: 184
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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