Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   1.7  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   6.8  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.0  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 268 YFYKNTDKNIKGHKLLLPFEIKMNFV 345
           Y YK  D+N++ + +++   IK NF+
Sbjct: 306 YMYKEDDENLESYFMMVALLIKYNFI 331


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 492 LTCLTILLSE*DNKLFFFSYKFQKFIIT-YIEQTLRSYIS 376
           LT   I + E  + L   +  ++ ++I  Y+E+ LRSYIS
Sbjct: 139 LTLKLINIGESFHSLLPINLPYEPYVIANYVERQLRSYIS 178


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 477 ILLSE*DNKLFFFSYKFQKFIITYIEQ-TLRSYISTP 370
           +LLS  +NK+ +F +K  ++ + Y E  TL +  S P
Sbjct: 658 VLLSIYENKIIYFDWKKNRWEVNYDEMYTLDNDYSEP 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,110
Number of Sequences: 5004
Number of extensions: 29186
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)