Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   2.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   6.8  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   6.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   6.8  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   9.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   9.0  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   9.0  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 57  FLSNIATIVDIYYSQNGIRPAVWLGFNIQNN--*EGYKKTV*HNNCFYSLEF 206
           FLS + +I++IY+ +   +  V L F IQ +   +G +     NN  Y+L +
Sbjct: 70  FLSAVDSILEIYFHRERQKEKVHLAFLIQQDDFWKGIRPNPTQNNLKYALSY 121


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 495 FVIRHHDVYGSI*FFQYFVYLYTYVRN 415
           F++ HH+VYGS  F      + T++ N
Sbjct: 533 FLLEHHEVYGSNLFASTTNIMSTFIHN 559


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 184 IAFIHWNLTRRGFRSIGLSDERTITGDEPKSELLP 288
           I  I W  T    + I  +  R + GDEP+ E  P
Sbjct: 638 IVMIPWCNTTECEKEIKKNSARQVNGDEPEDEKAP 672


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 9   HNNSAVLKYFERI*QVFLSNIATIVDI 89
           H+ SAVL++ +R+      NIA+ VD+
Sbjct: 521 HDGSAVLRFIDRVNFTKNLNIASAVDV 547


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 241 DERTITGDEPKSELLPEGWNDTENYRIRYVLESKLYILHGLNT 369
           +ER ++    K +L+ E  +  EN  +  + + +L  L GLN+
Sbjct: 855 EERIVSVQRKKRQLVKEALDSNENNPLSRLDKEELLYLFGLNS 897


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 417 YEHRCKDRRNTERI 458
           Y+HRCK R+ + RI
Sbjct: 409 YDHRCKTRKQSTRI 422


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 142 KTIERDIKKQSDIIIAFIHWNLTRRGFRSIGLSDERT 252
           +T++  +  Q   ++  IHW L + GF  + L    T
Sbjct: 809 RTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMT 845


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 465 NHRRHDAELQRF 500
           +HRRHD+EL+ F
Sbjct: 157 HHRRHDSELEEF 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,094
Number of Sequences: 5004
Number of extensions: 40953
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)