Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   4.7  
Z81483-6|CAE53731.1|  277|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U61953-13|AAO91705.1|  219|Caenorhabditis elegans Hypothetical p...    27   8.1  
U61953-12|AAC48073.1|  348|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 136 TFKTIERDIKKQSDIIIAFIHWNLTRRGFRSIGLSDERTITGD 264
           ++  + RD+K  + +I A  H  LT  G   IGL +  T+  +
Sbjct: 669 SYGIVHRDLKPDNLLITAMGHIKLTDFGLSKIGLMNRTTLVAE 711


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 136 TFKTIERDIKKQSDIIIAFIHWNLTRRGFRSIGLSDERTITGD 264
           ++  + RD+K  + +I A  H  LT  G   IGL +  T+  +
Sbjct: 669 SYGIVHRDLKPDNLLITAMGHIKLTDFGLSKIGLMNRTTLVAE 711


>Z81483-6|CAE53731.1|  277|Caenorhabditis elegans Hypothetical
           protein C43D7.9 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 469 WFHLILSVFRLSLHLC 422
           W+H ILS  RL L+LC
Sbjct: 154 WYHPILSAHRLQLNLC 169


>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 225 SKTPPC*IPVNKSNYYVRLFFYIPLNCFEC*IPAKQRV*CHFDYNKCP 82
           S+T P  IP  K + Y+R     P NC    +P +  + C F  +K P
Sbjct: 494 SETMPREIPGEKGSSYIRKQPSTPRNCRNMPVPLQYCI-CQFKKSKLP 540


>U61953-13|AAO91705.1|  219|Caenorhabditis elegans Hypothetical
           protein R08C7.2b protein.
          Length = 219

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -1

Query: 476 TSMVPFDSFSISSIFTPM--FVTARSSDLIKFTIKFPSVFKPCRI 348
           T+++P   F I +IF P+  F+   S  + +FT+++ +   PC++
Sbjct: 51  TTVIP-TVFVIGAIFLPIGVFLFIASDAVSEFTVEYTNCLSPCQL 94


>U61953-12|AAC48073.1|  348|Caenorhabditis elegans Hypothetical
           protein R08C7.2a protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -1

Query: 476 TSMVPFDSFSISSIFTPM--FVTARSSDLIKFTIKFPSVFKPCRI 348
           T+++P   F I +IF P+  F+   S  + +FT+++ +   PC++
Sbjct: 51  TTVIP-TVFVIGAIFLPIGVFLFIASDAVSEFTVEYTNCLSPCQL 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,618
Number of Sequences: 27780
Number of extensions: 225271
Number of successful extensions: 544
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)