Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.12 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.12 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.9  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   2.5  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   2.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 ESSPVWRKNLMFSNQTRGRL*RIMRPAMQLQV 356
           ++S VW  +L FSN+  G    I+ P + +++
Sbjct: 111 DASRVWMPDLFFSNEKEGHFHNIIMPNVYIRI 142


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 ESSPVWRKNLMFSNQTRGRL*RIMRPAMQLQV 356
           ++S VW  +L FSN+  G    I+ P + +++
Sbjct: 111 DASRVWMPDLFFSNEKEGHFHNIIMPNVYIRI 142


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 108 SVVLRGVKCTLKIEALPLMSGAGTNICLSNLP 13
           SVV+  V  T+      ++S +GT + +++LP
Sbjct: 829 SVVVTNVTTTINTPTTSVISMSGTTVPITSLP 860


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 104 TLNKENLARKMAALTPGFTGADIANVCNEAALIAARELANDITMKNFEQAIERV 265
           TLN E L      LTP     D+  +  +    AA E    +  K  + A+E++
Sbjct: 70  TLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKAADEDECMVARKYIDCALEKM 123


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 104 TLNKENLARKMAALTPGFTGADIANVCNEAALIAARELANDITMKNFEQAIERV 265
           TLN E L      LTP     D+  +  +    AA E    +  K  + A+E++
Sbjct: 70  TLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKAADEDECMVARKYIDCALEKM 123


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 55  NVWCWD 38
           +VWCWD
Sbjct: 456 SVWCWD 461


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 256 DGLFEIFHCNI 224
           D LF++ HCN+
Sbjct: 302 DFLFQVLHCNM 312


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 11/40 (27%)
 Frame = -3

Query: 513 SLTLPPSV--------MHILSNSCSL---LYKYCSLGKYC 427
           S+T+PPS+         ++  +S S+     KYC +GK C
Sbjct: 54  SMTIPPSIDRSSIHEESYLAESSRSIDPCASKYCGIGKEC 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,681
Number of Sequences: 438
Number of extensions: 3361
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)