Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C02f
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    28   0.92 
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    27   1.6  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   6.5  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    25   8.6  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 39  CNRPGGNKA*NLKLTHHRKIL 101
           CNR  G+KA N  L HH K+L
Sbjct: 446 CNRLAGDKADNWWLRHHPKVL 466


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 390 GRGWRHRGNAGHVNVKRQRKGK 455
           GRG R RGN GH    R+ +G+
Sbjct: 96  GRGQRGRGNYGHTAPNRRGRGR 117


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 109 LVIRI-FRWCVNFRF*ALFPPGLLH 38
           LVI I ++WC++++   L PP LL+
Sbjct: 574 LVITIVYKWCIDWKAKDLQPPSLLN 598


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 263 MKKLPGESGRDFSLRINSALKALHNPVENLDYPEDIDTEDTKGE 394
           +++LPGE   +FS R+N A+     PV     P  ID    K E
Sbjct: 71  IQRLPGERLSEFSQRVNKAI-----PVSFKSGPSKIDEFTDKKE 109


>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 62  SLKSKINAPPKDPDD-QPVPRSLTRLFSFQ 148
           +L++K   PPKDP+D + + RS+   F F+
Sbjct: 116 ALETKRTFPPKDPEDLKRLKRSVAGNFLFK 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,383
Number of Sequences: 5004
Number of extensions: 31040
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)