Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C02f
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    27   6.5  
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227...    27   8.7  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    27   8.7  

>06_03_0478 -
           21259376-21259465,21259862-21259924,21260025-21260066,
           21260180-21260461,21261084-21261587,21261973-21261981,
           21262122-21262196,21262375-21262449,21262557-21263494,
           21263577-21263607,21263694-21263979,21264691-21264905,
           21265329-21265437,21265556-21265611,21265730-21265822,
           21266348-21266393,21266496-21267221,21267489-21267550,
           21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 245 RNPITCMKKLPGESGRDFSLRINSALKALHNPVENLDYPEDID 373
           ++P    K+  GE G+  S  ++    A HN  EN+    D+D
Sbjct: 692 KSPTDASKQKQGELGQGKSTDVDQKEDAGHNAAENMKVDNDMD 734


>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
            18122824-18123105,18123159-18123292,18123425-18123508,
            18123611-18123901,18123982-18124314,18124620-18124750,
            18124826-18124930,18125011-18125167,18125248-18125351,
            18125442-18125602,18125800-18126116,18126369-18126650,
            18127011-18127312,18127609-18127699,18127771-18127824,
            18128110-18128186,18128279-18128438,18128545-18128629,
            18129059-18129367,18129514-18129890
          Length = 1507

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 35   LVQQARREQSLKSKINAPPKDPDDQPVPRSLTRLFSFQ 148
            +V   RR QSL   I+ PP+   D   P   ++ FS Q
Sbjct: 1198 IVAHCRRNQSLIKGISRPPQGSKDLFFPTQFSQSFSTQ 1235


>02_05_0602 +
           30283893-30284170,30286259-30286305,30286534-30287510,
           30287611-30287920,30288561-30290197
          Length = 1082

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 74  KINAPPKDPDDQPVPRSLTRL 136
           K++ PP  P+D+P P+ +T L
Sbjct: 889 KLSRPPPPPEDEPRPKKMTIL 909


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,785
Number of Sequences: 37544
Number of extensions: 200507
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)