Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C02f
         (506 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686224-1|AAT95434.1|  153|Homo sapiens voltage-gated sodium ch...    30   4.0  
AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium ch...    30   4.0  
AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium ch...    30   4.0  
AF150882-1|AAF24980.1| 1444|Homo sapiens voltage-gated sodium ch...    30   4.0  
AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium ch...    30   4.0  

>AY686224-1|AAT95434.1|  153|Homo sapiens voltage-gated sodium
           channel Nav1.9 protein.
          Length = 153

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 319 CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 179
           C+VD + + P  + W L  TCY +  +  F S  +F IL+ S   IF
Sbjct: 69  CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 114


>AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium channel
            protein.
          Length = 1791

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 319  CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 179
            C+VD + + P  + W L  TCY +  +  F S  +F IL+ S   IF
Sbjct: 1030 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 1075


>AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium channel
            type XI alpha subunit protein.
          Length = 1791

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 319  CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 179
            C+VD + + P  + W L  TCY +  +  F S  +F IL+ S   IF
Sbjct: 1030 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 1075


>AF150882-1|AAF24980.1| 1444|Homo sapiens voltage-gated sodium channel
            alpha subunit, alternate splice variant SCN12A-s protein.
          Length = 1444

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 319  CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 179
            C+VD + + P  + W L  TCY +  +  F S  +F IL+ S   IF
Sbjct: 1030 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 1075


>AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium channel
            alpha subunit SCN12A protein.
          Length = 1791

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 319  CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 179
            C+VD + + P  + W L  TCY +  +  F S  +F IL+ S   IF
Sbjct: 1030 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 1075


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,856,568
Number of Sequences: 237096
Number of extensions: 1091923
Number of successful extensions: 2794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2794
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)