Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321C02f
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    30   0.84 
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    30   0.84 
AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine re...    29   1.9  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    27   5.9  
U46671-7|AAA85752.1|  194|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 5/156 (3%)
 Frame = +2

Query: 38  VQQARREQSLKSKI--NAPPKDPDDQPVPRSLTRLFSFQXXXXXXXXXXXXXXXXLDQNA 211
           + +  R+++ + +I  N  P D +  P+PR+L  L S +                LD  +
Sbjct: 403 IAKEARDRTAQDEILANLVPLDENGVPLPRALPELKSIESPLDVSVKTLDQLI--LDMYS 460

Query: 212 EHRSRNKSSVGRNPITCMKKLPGESGRDFSLRINSALKALHNPV---ENLDYPEDIDTED 382
            +++   +   +N +T     P E   + S  + S +  LH      E L++  +  TE+
Sbjct: 461 NNKTEELNISEKNNVTSTFSEPSEKEDEASTTVISVISPLHTNATDSEILEHISEKSTEE 520

Query: 383 TKGEXXXXXXXXXXXXXXXXXXGQEDSEPQLNRNQG 490
           + G                   G+ D+      N G
Sbjct: 521 SSGSSGEMSGDGSDNEASGEGSGEYDASGSSGDNSG 556


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 5/156 (3%)
 Frame = +2

Query: 38  VQQARREQSLKSKI--NAPPKDPDDQPVPRSLTRLFSFQXXXXXXXXXXXXXXXXLDQNA 211
           + +  R+++ + +I  N  P D +  P+PR+L  L S +                LD  +
Sbjct: 403 IAKEARDRTAQDEILANLVPLDENGVPLPRALPELKSIESPLDVSVKTLDQLI--LDMYS 460

Query: 212 EHRSRNKSSVGRNPITCMKKLPGESGRDFSLRINSALKALHNPV---ENLDYPEDIDTED 382
            +++   +   +N +T     P E   + S  + S +  LH      E L++  +  TE+
Sbjct: 461 NNKTEELNISEKNNVTSTFSEPSEKEDEASTTVISVISPLHTNATDSEILEHISEKSTEE 520

Query: 383 TKGEXXXXXXXXXXXXXXXXXXGQEDSEPQLNRNQG 490
           + G                   G+ D+      N G
Sbjct: 521 SSGSSGEMSGDGSDNEASGEGSGEYDASGSSGDNSG 556


>AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein21 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 232 FVSTPVFCILIESLDFIFLVSFSNFTVFL 146
           F+S P++C+ + SL FI    F+ + +FL
Sbjct: 20  FISIPIYCLALYSLIFIKSNVFTTYRIFL 48


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 263 MKKLPGESGRDFSLRINSALKALHNPVENLDYPEDIDTED 382
           MKKLP  S    +   N  L A++    NLD   D D  D
Sbjct: 553 MKKLPARSNGSATGSSNDELSAIYTHERNLDALRDEDDSD 592


>U46671-7|AAA85752.1|  194|Caenorhabditis elegans Hypothetical
           protein C14E2.6 protein.
          Length = 194

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 278 GESGRDFSLRINSALKALHNPVENLDYPEDIDTED 382
           G+   DF LRI+  L A H+    + YP+ + T++
Sbjct: 118 GDFVPDFPLRISQTLPAAHHNTFEIYYPKHMTTDN 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,863,699
Number of Sequences: 27780
Number of extensions: 180375
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)