Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321C01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 54 2e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 52 5e-08
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 50 3e-07
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 40 2e-04
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 35 0.008
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.42
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.42
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 28 0.73
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 28 0.97
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 1.7
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 1.7
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 3.0
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.0
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 3.0
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 3.0
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 26 3.9
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 5.2
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 25 5.2
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 25 5.2
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 25 5.2
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 25 5.2
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 25 9.0
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p... 25 9.0
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 53.6 bits (123), Expect = 2e-08
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Frame = +2
Query: 95 LLSLIVLAVTLIFWWIFSRRYTLRN---SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMK 265
+++ I++ + IF R T++ +V L+G SDSGKT LF L Y + + T S++
Sbjct: 11 IVATIIIGAIISTLGIFFTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIE 70
Query: 266 ENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKS--SAKGIVFVIDSINIQKEIRDVAEY 439
N E + +VDLPG R + + + K +VFV++S I +++ +V
Sbjct: 71 PN--EAVWKYGAW-LVDLPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLM 127
Query: 440 LY-TIL 454
L+ TIL
Sbjct: 128 LFDTIL 133
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 52.0 bits (119), Expect = 5e-08
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Frame = +2
Query: 143 FSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDL 319
FSR ++ + +L++GL +GKT + +L +Q T ++ N+E N + D+
Sbjct: 13 FSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDV 72
Query: 320 PGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCD 460
GQ+++R + + + KG++FV+DS + I + + L+ I+ D
Sbjct: 73 GGQDKIR-PLWRHYFTGTKGLIFVVDSAD-SNRISEARQELHRIISD 117
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 49.6 bits (113), Expect = 3e-07
Identities = 30/114 (26%), Positives = 62/114 (54%)
Frame = +2
Query: 113 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITS 292
L+++ +F +F +R +L++GL +GKT + +L + T ++ N+E
Sbjct: 3 LSISKLFQSLFGKR---EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYR 59
Query: 293 NKTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTIL 454
N + + D+ GQ+++R + + + +GI+FV+DS N ++ I + E L +L
Sbjct: 60 NISFTVWDVGGQDKIR-PLWRHYFQNTQGIIFVVDS-NDRERISEAHEELQRML 111
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +2
Query: 173 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 352
VLL+GL ++GKT + L + + I I D+ GQ+ LRN F+
Sbjct: 19 VLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN-FW 77
Query: 353 EQHKSSAKGIVFVIDSIN 406
+ + S + I++V+DS++
Sbjct: 78 KNYFESTEAIIWVVDSLD 95
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 34.7 bits (76), Expect = 0.008
Identities = 21/88 (23%), Positives = 39/88 (44%)
Frame = +2
Query: 173 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 352
+L +GL ++GKT L L + ++ EE N DL G ++ R + +
Sbjct: 23 MLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR-RLW 81
Query: 353 EQHKSSAKGIVFVIDSINIQKEIRDVAE 436
+ GIV+++D + ++ AE
Sbjct: 82 RDYFPEVNGIVYLVDCCDFERLSESKAE 109
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 29.1 bits (62), Expect = 0.42
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 381 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 259
+P+A +L C + P RST++N L EV S I SF+
Sbjct: 463 LPIAFILGCLVGILQHYIAP-RSTMYNSLFEVTGSIITSFL 502
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.42
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 495 IRRGVVFP*MIG-SHKIVYRYSATSLISFCILIESITNTIPLALL 364
I+ + F + G SH ++ + T+L SFC + ++N PL+LL
Sbjct: 601 IQENIYFGIVAGLSHGPLHGFPLTNLQSFCTISSFLSNDFPLSLL 645
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 28.3 bits (60), Expect = 0.73
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Frame = +2
Query: 155 YTLRN-SVLLMGLSDSGKTLLFVRLAYSQYRQTFTS---MKENIEEYITSNKT--LKIVD 316
++LR ++ +G GKT L R Y Q+ T+ + + + ++T L++ D
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 317 LPGQERLRNKFFEQ-HKSSAKGIVFVIDS----INIQKEIRDV-AEYLYTILCDPIIQGN 478
GQER R+ SS IV+ I + +N +K I DV AE ++ ++ GN
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVII--VLVGN 124
Query: 479 TTPL 490
T L
Sbjct: 125 KTDL 128
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.9 bits (59), Expect = 0.97
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 83 RYITLLSLIVLAVTLIFWWIFS 148
+YI ++S+IVL +T + W++F+
Sbjct: 1440 QYINIISIIVLVLTSLAWFLFN 1461
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 341 NKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPL 490
N F +H S KGIVFV D+ ++Q ++D ++L L ++G +PL
Sbjct: 363 NVFAARHLSEVKGIVFV-DAGSVQ-TLKDSGQFLSRFLL--FVRGWLSPL 408
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 170 SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLP 322
S L G S +GKTLL LA + ++ ++ EY+ + +++ P
Sbjct: 616 SFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKHSVSRLIGAP 666
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 317 LPGQERLRNKFFEQHKSSAKGIVFVIDSI-NIQKEIRDVAEYLYT 448
L + L N FFE+ K+ + ++++DS+ ++ EIR + + T
Sbjct: 440 LAEDQLLLNNFFEELKNKLESDLYLLDSVFDLVPEIRSLLQQFST 484
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/94 (22%), Positives = 45/94 (47%)
Frame = +2
Query: 8 KRKNSTMESEVVKEKIHTEPILNDPRYITLLSLIVLAVTLIFWWIFSRRYTLRNSVLLMG 187
+R +ST + + + T P+++ + L S++V A+ I+W+ R S L G
Sbjct: 58 RRFHSTWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIYWY-------ARRSNCLTG 110
Query: 188 LSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYIT 289
++++ ++ L F S++ I +Y+T
Sbjct: 111 INEA--EYIWKSLIPESIFYHFVSLQSFIRKYLT 142
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -3
Query: 417 SFCILIESITNTIPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 259
SFC+ + ++T + ALL+ + +L + P I ++L +I +FSF+
Sbjct: 523 SFCVFLVALTRVVSFALLIPIAFDLAI---IP--KVIIAIILIIIQGLVFSFM 570
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 113 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMK 265
L + L F +FS+ R+ VLL G +GKTLL +A ++ F S+K
Sbjct: 671 LQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLLAKAVA-TELSLEFVSIK 720
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 439 VFCYISD-FFLYIDRINHKHNSLSTTLVLFKEFISQSLLSRQIDYFQCFIRSYILFNIF 266
+F + +D + L + + + + SLSTT+ LFK+ + + LS I Y +I NIF
Sbjct: 363 IFFFGTDRYSLPLYKTHARRFSLSTTIHLFKKIV-RITLSTFISYTWIPFLLFIFLNIF 420
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 173 VLLMGLSDSGKTLLF--VRLAYS 235
VLL+G DSGKT + +RL YS
Sbjct: 77 VLLLGAGDSGKTTIMKQMRLLYS 99
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.4 bits (53), Expect = 5.2
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Frame = +2
Query: 158 TLRNSVLLMGLSDSGKT---LLFVRLAYSQYRQT-----FTSMKENIEEYITSNKTLKIV 313
T+ ++L+G S GK+ L FV+ + YR++ F + I+E TS K L+I
Sbjct: 12 TINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN-TSVK-LEIW 69
Query: 314 DLPGQERLRN 343
D GQER ++
Sbjct: 70 DTAGQERYKS 79
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 5.2
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 161 LRNSVLLMGLSDSGK----TLLFVRLAYSQYRQTFTSMK-ENIEEYITSNKTLKIVDLPG 325
+R VLLMG S SGK +++F R+ ++ E+ N L + D G
Sbjct: 1 MRKKVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGG 60
Query: 326 QERLRNKFFEQHKSSAKGIVF 388
QE F E + S+ + +F
Sbjct: 61 QE----AFMENYLSAQRDHIF 77
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 338 RNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTT 484
RNK H +V + +N ++E+ D+A+ L D +I GNTT
Sbjct: 293 RNKLNSPHPPV---LVKIAPDLN-EEELTDIADVLKKCKIDGVIVGNTT 337
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 107 IVLAVTLIFWWIF--SRRYTLRNSVLLMGL 190
+ +TL+F+W+F SRR + ++L+ G+
Sbjct: 48 VFFLLTLVFYWVFDLSRRRATQLTILVCGV 77
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 415 RNQRCSRIPIHNLV*SDHSGKHNSPSNIG 501
RNQ+ S+ ++ DH+GK+ SP N G
Sbjct: 264 RNQQASQSESSSI---DHTGKNTSPDNPG 289
>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 115
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/36 (25%), Positives = 23/36 (63%)
Frame = +2
Query: 386 FVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLL 493
F+I+ ++ + D ++Y+ I+C +++ NTT ++
Sbjct: 60 FMIEEWHLLAILYDKSKYIKIIICSVLLKLNTTVII 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,756
Number of Sequences: 5004
Number of extensions: 43955
Number of successful extensions: 177
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -