Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B12f
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   2.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 11  VVALVSADVHDKELKIEENPRVYCGRHLANARMILC 118
           +  ++  +V DK +K E+N  +   R L     +LC
Sbjct: 269 IPTVLDRNVIDKWIKTEDNESLNAARMLIRQEGLLC 304


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 196 RPGAQISRRNNVCVEIRLGSLLD 128
           RP    S    VC++++L  L+D
Sbjct: 45  RPVVNTSDVLRVCIKLKLSQLID 67


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 196 RPGAQISRRNNVCVEIRLGSLLD 128
           RP    S    VC++++L  L+D
Sbjct: 45  RPVVNTSDVLRVCIKLKLSQLID 67


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 59  QFSTLCRGRQHS 24
           QF  +CR R+HS
Sbjct: 341 QFLQVCRSRRHS 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,886
Number of Sequences: 438
Number of extensions: 2286
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)