Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   0.56 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   3.9  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.2  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    25   9.0  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = -2

Query: 454 TCRPILRSHRHVACVLLPQEPSRGPSWRQCP*GTILTIR*GPRIAGSTFPVDCELLPKQD 275
           T  P+L   +  A     Q PS GP+ +       ++I   P  A +  P+  ++L  Q 
Sbjct: 61  TLHPLLSQQQQPA----QQSPSLGPAQQNIQQPPSVSIASQPHYAEAIVPIQ-QVLQPQQ 115

Query: 274 YRHYKRLLLVGARPRERHVALHSVVPI 194
           YR     ++      ++H  L  ++PI
Sbjct: 116 YRQLPPNMVAATNAPQQHPQLQRMMPI 142


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 364 GIAASSGPSMVPAAVARKRRA 426
           G+A++  P+ VP  +ARK RA
Sbjct: 68  GLASNKTPTTVPMVIARKMRA 88


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 384 PLDGSCGSSTQATCRWLRNIGRQVNL 461
           P+D   G+  QA C WL+ I  + NL
Sbjct: 106 PVDKHNGNDLQAFCEWLKVIFTEHNL 131


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 163 ELYGSETPQS*HH*LESSPQVWWRLFYQKLQG 68
           ELY S+ P       E++P VW R+ Y+ L+G
Sbjct: 160 ELYASQPP-------ENTPGVWNRMEYRPLEG 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,526
Number of Sequences: 5004
Number of extensions: 41378
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)