Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321B10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857... 30 0.98
12_01_0008 + 63393-64004 28 4.0
11_01_0009 + 67344-67955 28 4.0
03_06_0142 + 31957117-31958520 28 4.0
03_01_0235 - 1842909-1843498,1844380-1844569 28 4.0
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 28 4.0
09_02_0449 - 9461385-9461431,9461487-9461628,9461733-9461831,946... 28 5.2
04_01_0296 + 3927741-3927960,3928257-3928900 28 5.2
03_05_0534 + 25343973-25344267,25344510-25344979 28 5.2
07_01_0118 + 898100-898233,898347-898779 27 6.9
04_03_1009 + 21701102-21701968 27 6.9
03_01_0350 - 2753217-2754152 27 6.9
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 27 6.9
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 9.1
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 27 9.1
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411 27 9.1
>12_02_1159 +
26585042-26585441,26585520-26585608,26585670-26585720,
26586189-26586282,26586451-26586512,26586589-26586671,
26586793-26586901,26587010-26587051,26587152-26587316,
26588165-26588341,26588820-26588984,26589069-26589332
Length = 566
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 349 GWCLTGIAASSGPSMVPAAVARKRRAGGCVISVGR 453
GW +G A +++P AVAR R GCVI V R
Sbjct: 69 GWYSSGTAPED--ALLPCAVARPPRMYGCVIGVQR 101
>12_01_0008 + 63393-64004
Length = 203
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 449 PTDITQPPARRLRATAAGTIEGPELAAMPVRHHPHH 342
P T PPA A AAG + A M + HH HH
Sbjct: 82 PPSSTVPPAPT--AAAAGAVVQVHPAVMQLHHHHHH 115
>11_01_0009 + 67344-67955
Length = 203
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 449 PTDITQPPARRLRATAAGTIEGPELAAMPVRHHPHH 342
P T PPA A AAG + A M + HH HH
Sbjct: 82 PPSSTVPPAPT--AAAAGAVVQVHPAVMQLHHHHHH 115
>03_06_0142 + 31957117-31958520
Length = 467
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 434 QPPARRLRATAAGTIEGPELAAMPV 360
QP A+RLRA AA T E +PV
Sbjct: 18 QPAAKRLRARAAATAEARTTTTLPV 42
>03_01_0235 - 1842909-1843498,1844380-1844569
Length = 259
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 286 PKQDYRHYKRLLLVGARPRER 224
P++ H +RLLLVG RPR+R
Sbjct: 109 PRRLRLHRRRLLLVGRRPRQR 129
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = -1
Query: 470 CRNQVYLPTDITQPPARRLRATAAGTIEGPELAAMPVRHHPHHSVRSTDCR 318
C P PPARR A+ GP + +P +HS+ D R
Sbjct: 284 CGRAAAPPPPPPPPPARRTSGAASPAASGPRVTRVPEVVEFYHSLMRRDSR 334
>09_02_0449 -
9461385-9461431,9461487-9461628,9461733-9461831,
9462052-9462100,9462179-9462212,9462880-9463055,
9463094-9463532,9463784-9463971,9463988-9464496
Length = 560
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 515 SVHWVEFRQPYTGHACRNQVYLPTDITQPP 426
+ WVE R P +N LP D T PP
Sbjct: 137 TAEWVEARLPRLRQHVQNVAALPADFTAPP 166
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 402 GSSTQATCRWLRNIGRQVNLIP 467
GSS+ CR +R +GRQ+ + P
Sbjct: 220 GSSSSTPCRCMRQVGRQLGMRP 241
>03_05_0534 + 25343973-25344267,25344510-25344979
Length = 254
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 262 KRLLLVGARPRERHVALH--SVVPIDKLYLDLVLHELYGSETP 140
+R+L G RPR +HV +H SV + +D VL EL P
Sbjct: 133 RRVLAGGERPRAQHVVVHEASVEGAVEAVVDPVLPELAAGALP 175
>07_01_0118 + 898100-898233,898347-898779
Length = 188
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 319 GSTFPVDCELLPKQDYRHYKRLLLVGARPRERHVALHSV 203
G+T P+ +LLPK+ Y ++ ++ G+ H + SV
Sbjct: 60 GTTPPLRLQLLPKEAYWYFFKVCTFGSMDASEHPEIASV 98
>04_03_1009 + 21701102-21701968
Length = 288
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -1
Query: 443 DITQPPARRLRATAAGTIEGPELAAMPVR-HHPHHSVR 333
D T P A AA T AA P+R HH HH R
Sbjct: 3 DFTFPITAAAAAAAADTAAAAAAAAEPLRLHHHHHHHR 40
>03_01_0350 - 2753217-2754152
Length = 311
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 470 CRNQVYLPTDITQPPARR-LRATAAGTIEGPELAAMPVRHHPHH 342
CR+ V LP T P A +R T+A + E A RHH HH
Sbjct: 169 CRSDVTLP--FTPPAAAAPVRPTSATHPDDDEDAESARRHHHHH 210
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 389 EGPELAAMPVRHHPHHSVRSTDCRIYISCRL 297
+G EL+A+P HH H + + R++ +C L
Sbjct: 347 DGAELSALPCNHHFHWTCITKWLRMHATCPL 377
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 331 PRIAGSTFPVDCELLPKQDYRHYKRLLLVGARPRERHVALHSVVPIDKLYLD 176
P +AG P DC P +++H R +G HV + V + L ++
Sbjct: 89 PHVAGRPKPNDCLHTPCINHKHLHRHYSIGVEDLVHHVGRNRVDEVAHLDME 140
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 36 EHHKMQDNRHPPCSFW*KRRHHTCGE 113
E KM + R FW KRRHH G+
Sbjct: 560 EVEKMLEGRELRLRFWAKRRHHHGGD 585
>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
Length = 229
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 449 PTDITQPPARRLRATAAGTIEGPELAAMPVRHHPH 345
P PPA AA P AA+P HHP+
Sbjct: 26 PALAAAPPATAAADLAAAAATTPAAAALPGCHHPY 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,271
Number of Sequences: 37544
Number of extensions: 334811
Number of successful extensions: 1051
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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