Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    27   8.1  
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    27   8.1  
AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.      27   8.1  

>Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical
           protein T23G7.1 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 437 TQPPARRLRATAAGTIEGPELAAMPVRHHPHH 342
           T PP RRL   A     GP    +P  H P H
Sbjct: 440 TVPPDRRLSTGATSVNSGPVKYYVPQGHQPMH 471


>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 369 CRQLGPLDGSCGSSTQATCRWLR 437
           CR+LGP   SC  + QAT  W+R
Sbjct: 161 CRELGPKCASCDRTIQAT-DWVR 182


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 369 CRQLGPLDGSCGSSTQATCRWLR 437
           CR+LGP   SC  + QAT  W+R
Sbjct: 161 CRELGPKCASCDRTIQAT-DWVR 182


>AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 437 TQPPARRLRATAAGTIEGPELAAMPVRHHPHH 342
           T PP RRL   A     GP    +P  H P H
Sbjct: 440 TVPPDRRLSTGATSVNSGPVKYYVPQGHQPMH 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,398,547
Number of Sequences: 27780
Number of extensions: 251969
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)