Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.8  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   7.7  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 294 SYYPNKIIDITNGCCSSVPVHASVMSLY 211
           S Y N ++DI N  C S   + S +  Y
Sbjct: 306 SLYTNIVVDIRNEDCGSAIAYVSDVFRY 333


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 367 CP*GTILTIR*GPRIAGSTFPVDCELLPKQDYRHYKRLLLVGARPRE 227
           C  GT+L I   P +  +T P+D     K      K+++L+   P E
Sbjct: 558 CVLGTVLIILQAPSLYDTTKPIDI----KYSKIAKKKMMLMNMGPEE 600


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -3

Query: 288 YPNKIIDITNGCCSSVP--VHASVMSLYTPWY 199
           YP  ++   NG C  VP  +  S   +   W+
Sbjct: 124 YPTNVVVKNNGTCLYVPPGIFKSTCKIDITWF 155


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 288 YPNKIIDITNGCCSSV 241
           +P KII + N  C+S+
Sbjct: 17  FPEKIIGLHNNMCTSL 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,410
Number of Sequences: 438
Number of extensions: 3382
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)