Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.24 
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   2.2  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   3.0  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   6.8  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    25   9.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   9.0  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   9.0  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 85  NKRIINYVITNVYRSLGVQ---CNAESKIASTTKFCTEKL 195
           N+R+INYV+TN++  +  Q     A   +A++ K C + L
Sbjct: 479 NERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQSL 518


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 171 HKILYRET--MWSEIMHENLEQGSLHA 245
           H I++RET  +WSE+M     Q S++A
Sbjct: 78  HVIVWRETGGVWSELMDHTAHQASVNA 104


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 516 FRSAGVLKTATALPAVSTKEPAMYPYVVFIRSF 418
           F   G LKT   +     K PA+ P V+ I+ F
Sbjct: 359 FNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHF 391


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 137 FNVTQSLKSPVPQNFVPRNYVVRNYAREP 223
           F +  S   P  ++F P+NY+VRN +  P
Sbjct: 219 FFLGHSFVPPNFESFHPKNYLVRNSSSHP 247


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 383 TLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAV 493
           T+QE+      +K++ + T+  + GSL LT G  V +
Sbjct: 464 TIQEAIETVMSIKQKSRNTFVCVTGSLHLTGGVFVVL 500


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 171  HKILYRETMWSEIMHENLEQGSLHAHNPHFGRDSWHLLDQMHSAWAR 311
            H+++    +W E  HE LE+ S      H     + +L  +H    R
Sbjct: 1816 HELIRAAILWHEQWHEGLEEASRLYFGDHNIEGMFAVLRPLHEMLER 1862


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 228 QGSLHAHNPHFGRDSWHLLDQMHSA 302
           QG L A  PH    SW L  Q+H A
Sbjct: 107 QGCLGASQPHREWASWSLNQQVHVA 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,826
Number of Sequences: 5004
Number of extensions: 42762
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)