Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   3.0  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   3.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   3.0  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   5.2  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   5.2  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   9.0  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 334 YSTR--VSIFWLLYKKELKEVSLRKLPTTE 417
           YST+  +S FW  Y +E+K V+L +  TTE
Sbjct: 426 YSTKQMISKFWETYYEEVKVVNLPEENTTE 455


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
 Frame = +2

Query: 59  PEPRSHLSNIR----YNKCNKEP-------NSLKLFKNQISILNSRTSRSFYFRNLNPSS 205
           P P SHL N +    Y+   K P       NS     NQIS+ +S +  S +  +L+P S
Sbjct: 62  PSPPSHLQNFQDQFDYSSVLKTPFNPLLEANSAYFLSNQISLPDSHSYASSFDASLSPPS 121


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 151 NRNLIFK*L*GIRFFIAF 98
           NRNL+FK L GIRF I +
Sbjct: 622 NRNLLFKRLMGIRFVIHY 639


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 36  GHSRYYPIQNPG---RIFQISDTINAIKNLIP*SYLKIKFLF*IRAHLVRSIF 185
           GH R+ PI NP    R F+ ++ +  +   +  S  +++    +  HLVR IF
Sbjct: 196 GHRRFNPIPNPDAELRFFEAAEQLFTLGYTLG-SSSEVRVPTHVNNHLVRGIF 247


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 50  LPHPEPRSHLSNIRYNKCNKEPNSLKLFKNQISILNSRTSRSF 178
           L  P   S  S+   NK N + NSL  FK     +  R  RSF
Sbjct: 179 LNSPSSPSSSSSPYKNKDNSKSNSLLSFKTDDDSITKRRLRSF 221


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 413 VVGSFRRETSFNSFLYNNQNIETRVLYGTVHAQSSCSSVES 291
           V  S   ++ FN  +  +QN+ TR+++        C++  S
Sbjct: 41  VTESLTEDSEFNYIVNESQNVSTRLIFWNKWIYILCANTSS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,947
Number of Sequences: 5004
Number of extensions: 39694
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)