Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    28   3.5  
Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 96  IQVNLFKFYCLSLSLLNFKCFNILLLNYKI 185
           +Q N F +Y L L + NF C  ILL  +KI
Sbjct: 184 LQFNSFLWYMLYLKITNFICNLILLFIHKI 213


>Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical
           protein C41C4.7b protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 48  FKNLRTIRSHFRCYVIIQVNLFKFYCLSLSL-----LNFKCFNILLLNYKIKFVNSI 203
           F  +  IRSHF   +I  V    F+  S+S      LNFK  +++ LN+    +N +
Sbjct: 114 FARITVIRSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLV 170


>Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical
           protein C41C4.7a protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 48  FKNLRTIRSHFRCYVIIQVNLFKFYCLSLSL-----LNFKCFNILLLNYKIKFVNSI 203
           F  +  IRSHF   +I  V    F+  S+S      LNFK  +++ LN+    +N +
Sbjct: 114 FARITVIRSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLV 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,436,881
Number of Sequences: 27780
Number of extensions: 195056
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)