Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   5.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   9.0  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 235  FSGVPLRYCLYLLMTTYPCVPLIRLT*QKTHAF*IIEMVY-INTC 366
            F+G+ + + L+LL   YPC   I  T  +   F I+ + Y IN C
Sbjct: 1274 FTGLYIVHLLFLLTIFYPCP--IAYTYVRNSIFLILSICYTINIC 1316


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 344 KWFTLIHAFTVCNF*RNINCFLDL 415
           +W  L H F   NF  N+ C++ L
Sbjct: 860 EWGVLQHTFISSNFFENVPCYISL 883


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 518 CDRLPIRQITLTMYLYLCQLL 456
           C R+P ++ITL   LY+ Q++
Sbjct: 141 CKRMPKKEITLNQKLYVSQVI 161


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 68  RVITLETLSNNESVVEFEKWKRT*LIHAHDRHIIKINLMTPNQTKPK 208
           +V+  E +  N+ V   +  KR  L+   +RH   +NL +  QT+ +
Sbjct: 712 KVLKKEFILENDEVESTKSEKRVFLVANRERHPFLVNLHSCFQTETR 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,547
Number of Sequences: 5004
Number of extensions: 36946
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)