Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321B03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-7|CAB04179.1|  319|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF022975-6|AAB70671.2|  293|Caenorhabditis elegans Serpentine re...    27   8.1  

>Z81513-7|CAB04179.1|  319|Caenorhabditis elegans Hypothetical
           protein F26D2.9 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -1

Query: 506 PIRQITLTMYLY---LCQLLKFIGTLQSVGYCNINQENNLYFFKSCIQ*KHVLM*TISII 336
           PIR  ++T++L     C L++   T+ S+G     Q   L+  ++C+     +  TI ++
Sbjct: 68  PIRNSSVTIFLIGIATCDLVRMFETIFSLGKMYYKQLLFLHISQTCVPPLSYIDMTIFVV 127

Query: 335 QNACVFCYVNL 303
            NA     V+L
Sbjct: 128 LNALDMISVDL 138


>AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical
           protein C24H12.4b protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 506 PIRQITLTMYLYLCQLLKFIGTLQSVGYCNINQENN 399
           P +++   +Y    +L + +  LQ++  C+IN+E N
Sbjct: 104 PTKELITQIYKLFVKLSQALPFLQAINLCDINEEEN 139


>AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical
           protein C24H12.4a protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 506 PIRQITLTMYLYLCQLLKFIGTLQSVGYCNINQENN 399
           P +++   +Y    +L + +  LQ++  C+IN+E N
Sbjct: 171 PTKELITQIYKLFVKLSQALPFLQAINLCDINEEEN 206


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -3

Query: 261 TVAERYSAKVS---PSF*CNYFGFVWFGVIKFILIICLSCA*INYVRFHFSNSTTDSLLL 91
           T+ +++S  +S   P F C++   + F +  +I I    C   NY  F F + +  ++++
Sbjct: 10  TMTQQFSTSISINSPLFKCSFIFLIQFVIFTYIHIFSYLCVLFNY--FLFIDLSISTVIV 67

Query: 90  NVSNVI 73
           + S  I
Sbjct: 68  SFSRFI 73


>AF022975-6|AAB70671.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 12 protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 210 YFGFVWFGVIKFILIICLSCA*INYVRFHFSNSTTDSLLLNVS 82
           YF F+  G+I  ++   LSC  I+Y  F    S T +L+  +S
Sbjct: 41  YFRFLLDGIISILIAAFLSCG-ISYSMFPEQFSQTQNLIFYLS 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,411,584
Number of Sequences: 27780
Number of extensions: 200002
Number of successful extensions: 367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)