Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321A12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 30 0.24
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 29 0.32
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 29 0.42
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 1.7
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 3.9
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 9.0
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 9.0
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 25 9.0
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 9.0
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 29.9 bits (64), Expect = 0.24
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +3
Query: 165 MQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKR 344
++ HQS++ + + KLT+S L L +L KQK + K E++ K +
Sbjct: 281 LKSHQSSSSVQNSSRKLTSSQLTLRQSSLFDRVRKKQKAMEAKKAEEF----KNNLVVHT 336
Query: 345 LGKEPISNLQGHDYAQLQIAIY 410
L KE +S ++ D +Q++ +
Sbjct: 337 LAKEKVSFVRIIDLIFVQLSTW 358
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 29.5 bits (63), Expect = 0.32
Identities = 18/83 (21%), Positives = 36/83 (43%)
Frame = +3
Query: 78 KMESHPLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQH 257
+++ HP N ++ R A + YD ++ E + ST E
Sbjct: 326 QLDEHPHNFTQRELREARRIIPQFSYDPPGASGRNRRER-TSSTPSEQSTSVNETANSLS 384
Query: 258 SYHLKQKDLIKYKKEQYVRVKKA 326
+ HL + ++ ++E+YVR ++A
Sbjct: 385 NLHLSRGEIAHLRQEEYVREQQA 407
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 29.1 bits (62), Expect = 0.42
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 237 EAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKRLGK 353
E +++ H KQK +YKK ++ KKA IK+L K
Sbjct: 45 EQLSMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEK 83
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 87 IPFWCHPFTFNNWNQKELPSL 25
+P W F NW+ LPSL
Sbjct: 452 LPIWLTEFACTNWDDSNLPSL 472
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -2
Query: 331 SMAFLT-LTYCSFLYFIKSFC 272
S+AF+ L YCSF +FI C
Sbjct: 432 SLAFIVCLKYCSFYFFIGPIC 452
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 111 QQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTST 227
QQH++ +H K+H + ++ E ++ +TT+T
Sbjct: 546 QQHKQKSSHHKHHHHKKSKSSSSKHKENDKASVSITTTT 584
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 123 RAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYKKE 302
RA+AH +++EA++ QSA EL L L+ + L+ S ++ KE
Sbjct: 301 RAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQ-LELKKSKRKDHYKILGVSKE 359
Query: 303 QY-VRVKKA 326
+ +KKA
Sbjct: 360 ATDIEIKKA 368
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 75 TKMESHPLNLAHQQHRRAEAHLKNHRYD 158
T+ +S L L H Q E L+ RYD
Sbjct: 161 TRHDSKTLGLNHNQGAHIELRLRTDRYD 188
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 267 LKQKDLIKYKKEQYVRVKKAMDTIKRLGKEP 359
L ++ +IK KKE+YV ++K + + L K P
Sbjct: 130 LDKRHIIKEKKEKYVNIEK--EALCILSKHP 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,317
Number of Sequences: 5004
Number of extensions: 29086
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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