Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321A12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0669 + 12779583-12779675,12779942-12780124,12780266-127804... 30 1.3
11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158 29 3.0
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 29 3.0
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 28 4.0
11_01_0222 + 1740828-1740830,1741109-1741218,1741304-1741487,174... 28 5.2
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085... 28 5.2
06_01_0371 - 2678332-2678541,2678650-2678804,2678895-2678940,267... 28 5.2
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 28 5.2
06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467... 27 9.1
03_06_0247 + 32632495-32633619 27 9.1
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 27 9.1
>02_02_0669 +
12779583-12779675,12779942-12780124,12780266-12780481,
12780590-12780952,12781453-12781612,12781724-12781827
Length = 372
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +3
Query: 204 AMKLTTSTLALEAI----TLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKRLGKEPISNL 371
A KLT ++ A+EA+ TL +H+K + +I+ ++++YVR +A+ I R K P +
Sbjct: 26 AHKLTAAS-AIEAMDVLDTLVVRFHIKGEFVIEVREKKYVRSVEALSYIAR-DKVPFGEI 83
Query: 372 QGH 380
H
Sbjct: 84 LAH 86
>11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158
Length = 425
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 237 LKPK*KSLTSLHQQEVRQHFDDIALLHHICDSSSELQHDDVA 112
L+ K K + QQ+ H D+A LH +++ +HD+V+
Sbjct: 263 LQQKLKKARTEEQQQAAFHVSDVATLHAHAAAAAAARHDEVS 304
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 120 RRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYK 296
RR EAH K YDEA+ + EL + S LE + + +K++ + K K
Sbjct: 291 RRGEAHEKLEHYDEAIADMKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGKLK 349
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 96 LNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALE 239
+N Q+ R A + + +A + HQ AA LL + KLT L L+
Sbjct: 334 INEGAQERYRVHAQAEASQ-QQANEAHQQAAALLEEVQKLTVENLQLK 380
>11_01_0222 +
1740828-1740830,1741109-1741218,1741304-1741487,
1742159-1742344,1742631-1742849,1742958-1743171,
1743549-1743601,1743839-1743874
Length = 334
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/93 (21%), Positives = 37/93 (39%)
Frame = +3
Query: 156 DEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDT 335
D+ C EL ++ KLT + H K KD+ + +EQ + +D
Sbjct: 52 DDYFHCEHCKGELRPESEKLTLDEIVCGGGNAIKHTHDKLKDMQQRMEEQLKPLIAVLDR 111
Query: 336 IKRLGKEPISNLQGHDYAQLQIAIYRAINETDS 434
+K L +LQ + A + + A+ + +
Sbjct: 112 VKDLPFPSFMSLQDWERATIGASANGAVGSSQN 144
>09_02_0524 -
10207711-10208154,10208237-10208338,10208439-10208531,
10208612-10208683,10208730-10208798,10208928-10209175,
10209256-10209370
Length = 380
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 96 LNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALE 239
+N Q+ R A + + +A + HQ AA LL + KLT L L+
Sbjct: 277 INEGAQERYRVNAQAEAAQ-QQANEAHQQAAALLEEVQKLTVENLQLK 323
>06_01_0371 -
2678332-2678541,2678650-2678804,2678895-2678940,
2679203-2679424,2679546-2679586,2680104-2680233,
2680316-2680384,2680612-2680665,2680801-2680959,
2681455-2681541,2681628-2681690,2681801-2681840,
2681939-2681985,2682471-2682773
Length = 541
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 230 GFRGYYAATQLSLKTKRFNKVQKR 301
G+RG+YA + L K N + KR
Sbjct: 182 GYRGFYACNTIDLSPKSVNDIHKR 205
>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 213 TSLHQQE-VRQHFDDIALLHHICDSSSELQHDDV 115
TS+ E + HFDD LL H+C + D++
Sbjct: 1569 TSIGDSELIDDHFDDNFLLQHLCSEIMDFSGDNI 1602
>06_01_0645 +
4670966-4671021,4671128-4671177,4671270-4671350,
4671862-4672078,4673220-4673607,4673830-4674033,
4675174-4675334,4675401-4675586,4675732-4675963,
4676530-4676732,4677074-4677208,4677367-4677550
Length = 698
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -3
Query: 291 TLLNLFVLSDSCVAA**PLKPK*KSLTSLHQQEVRQHFDDIALLHHICDSSSELQ 127
TL+N++ + C+ K K++ + R++F + L H CD S++Q
Sbjct: 542 TLVNVYRAAKECLEKSKNANAKEKTMEKALNRWCRENFINYRSLRHACDVHSQIQ 596
>03_06_0247 + 32632495-32633619
Length = 374
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 171 IALLHHICDSS-SELQHDDVADVPSLVDEIPFWCHPFTFNNWNQKE 37
+ L+H + S ++L DDV DV ++P C FT ++W E
Sbjct: 237 VDLIHGVLFCSCADLLSDDVKDVDFDSIDLPLDCLKFTPHSWTMAE 282
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 153 ICDSSSELQHDDVADVPSLVDEIPFWCHP 67
+C H+D A VPS +P+WC P
Sbjct: 574 LCQRVHSRSHNDQASVPS---PMPWWCRP 599
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,963,829
Number of Sequences: 37544
Number of extensions: 161169
Number of successful extensions: 484
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -