Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC024817-56|AAK68528.1|  166|Caenorhabditis elegans Hypothetical...    29   2.0  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    28   3.5  
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    28   3.5  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   3.5  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    28   3.5  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family ...    27   8.1  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    27   8.1  
AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    27   8.1  

>AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical
           protein CD4.5 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +2

Query: 65  NGWHQNGISSTKLGTSATSSC*SSLEESQI**SNAMSSKCCRTSC*CNEVNDFYFGFRGY 244
           NG   N  SS       TS+  S LE SQ+  +    S C   +C  N+ +  +FG  G 
Sbjct: 137 NGLEDNDASSAITVQKITSTASSILESSQV--NVKELSSCSALTCTFNDGDSCFFGLSGV 194

Query: 245 YAATQLSLKTK 277
            +    SL  +
Sbjct: 195 GSTAAWSLSDR 205


>AC024817-56|AAK68528.1|  166|Caenorhabditis elegans Hypothetical
           protein Y54G2A.3 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +3

Query: 111 QQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIK 290
           QQHRR     K    DE  Q   S  +  +D  KL    L    I   + +  K   ++K
Sbjct: 11  QQHRR-----KKKPADEVTQKMPSGEKEPMDPYKL--EALKKAQIERNNEWIEKMSPIVK 63

Query: 291 YKKEQYVRVKKAMDTIKR 344
           YK ++Y+R ++A    +R
Sbjct: 64  YKIQEYIRKQRAKKMQRR 81


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 340  LIVSMAFLTLTYCSFLYF-IKSFCFK 266
            +++++ FL LT C  LYF  K  CFK
Sbjct: 2837 ILLALLFLLLTLCCLLYFCTKCHCFK 2862


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 340  LIVSMAFLTLTYCSFLYF-IKSFCFK 266
            +++++ FL LT C  LYF  K  CFK
Sbjct: 3421 ILLALLFLLLTLCCLLYFCTKCHCFK 3446


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 340  LIVSMAFLTLTYCSFLYF-IKSFCFK 266
            +++++ FL LT C  LYF  K  CFK
Sbjct: 2837 ILLALLFLLLTLCCLLYFCTKCHCFK 2862


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 340  LIVSMAFLTLTYCSFLYF-IKSFCFK 266
            +++++ FL LT C  LYF  K  CFK
Sbjct: 3421 ILLALLFLLLTLCCLLYFCTKCHCFK 3446


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 123 RAEAHLKNHRYDEAMQCHQSAAELLVD 203
           RAEAH+ +  YD A++ +Q A E+  D
Sbjct: 331 RAEAHILDEDYDSAIEDYQKATEVNPD 357


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 273 QKDLIKYKKEQYVRVKKAMDTI-KRLGKEPISNLQGHDYAQLQI 401
           Q + ++Y KE  V   + M+   KR+G++ +++  GH+   LQI
Sbjct: 364 QNNYVQYLKEMAVLYPEYMERFGKRVGRDLLASHNGHENVVLQI 407


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 340  LIVSMAFLTLTYCSFLYF-IKSFCFK 266
            +++++ FL LT C  LYF  K  CFK
Sbjct: 3421 ILLALLFLLLTLCCLLYFCTKCHCFK 3446


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 222 KSLTSLHQQEVRQHFDDIALLHH--ICDSSSELQHDDVADV 106
           KSL      E R+HF D+AL  H  +C   S +Q  +V ++
Sbjct: 711 KSLLHALTGEARKHFGDLALRCHAVVCCRMSPMQKAEVVEM 751


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 222 KSLTSLHQQEVRQHFDDIALLHH--ICDSSSELQHDDVADV 106
           KSL      E R+HF D+AL  H  +C   S +Q  +V ++
Sbjct: 711 KSLLHALTGEARKHFGDLALRCHAVVCCRMSPMQKAEVVEM 751


>Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical
           protein F55C5.7 protein.
          Length = 848

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 141 KNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHL 269
           + H Y+ A QC++SAA  L+  + + +      A+  + + +L
Sbjct: 268 EEHAYELAFQCYKSAASSLIQGVHIESDMTKRNAVRRKTAKYL 310


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 261 YHLKQKDLIKYKKEQYVRVKKAMDTIKR 344
           Y L Q+D++KY +E   R K++++  KR
Sbjct: 233 YALDQQDMVKYMEENDDRQKESIEKYKR 260


>U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family
           protein 1 protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 204 AMKLTTSTLALEAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKRL-GKEPISNL 371
           A  + TS  A+E  T++ SY+ +Q      +KEQ +R K+ +D +K + G+E   N+
Sbjct: 345 APSVATSVSAMEHDTIE-SYYERQAQKRAMQKEQNMR-KRRVDDVKMITGEEMKGNM 399


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 222 KSLTSLHQQEVRQHFDDIALLHH--ICDSSSELQHDDVADV 106
           KSL      E R+HF D+AL  H  +C   S +Q  +V ++
Sbjct: 387 KSLLHALTGEARKHFGDLALRCHAVVCCRMSPMQKAEVVEM 427


>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 170 MSSKCCRTSC*CNEVNDFYFGF--RGYYAATQLSLKTKRFNKVQKRAIC 310
           ++S  C + C   E N FY     R  Y + Q SL T+ FNK +   IC
Sbjct: 4   LASLIC-SGCEDGETNQFYDNLEKRQCYCSCQHSLCTQCFNKYKNCPIC 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,265,790
Number of Sequences: 27780
Number of extensions: 160060
Number of successful extensions: 520
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)