Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321A11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 85 8e-18
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 5e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 30 0.18
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 1.3
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 1.7
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 1.7
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 2.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 2.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 3.0
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 3.0
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 3.0
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 3.9
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 5.2
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 6.8
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 6.8
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 6.8
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 25 9.0
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 9.0
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 9.0
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.0
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 84.6 bits (200), Expect = 8e-18
Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
Frame = +2
Query: 77 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQ-EENAKIENSEDETELDIAIIRQVEYYF 253
+ +V +E+ +V+ K T +E ET + E++ K + S DE E +++QVE+YF
Sbjct: 20 SSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEAE----VLKQVEFYF 75
Query: 254 GDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSED 433
D NL DKFL + +DGWVP++T+ F R+ + + + I NAL KS LLEV E
Sbjct: 76 SDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEA 133
Query: 434 NKKVRRNPEQPLPEMNEELRKEICNRSIY 520
+KVRR PL ++ K + RS+Y
Sbjct: 134 GEKVRR--MIPLVRVD---NKSVMERSVY 157
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 45.6 bits (103), Expect = 5e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +2
Query: 236 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGL 415
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388
Query: 416 LEVSED 433
++V+ D
Sbjct: 389 IDVAID 394
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 30.3 bits (65), Expect = 0.18
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 164 NGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD 310
NG + + E E+E + + + ++ N HR++FL E + +D+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDE 242
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.3
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = +2
Query: 191 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTED 370
+N++++ ++ + Q+ GDV + KFL +++ + + L LT + + K +
Sbjct: 20 KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79
Query: 371 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE--ELRKEICNRSI 517
+ V + T LL+++ D+ R + +NE E+ K+ N S+
Sbjct: 80 SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSL 130
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 1.7
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Frame = +2
Query: 92 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETEL-DIAIIRQVEYYFGDVNL 268
S +E+ + +PE + T + T E +EE + E E+E E+ + ++E GD++L
Sbjct: 331 SEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSL 390
Query: 269 H---RDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVI 382
F+ E ++ + + E + L K +E T+++
Sbjct: 391 SLGVASSFVDEMLR-ERNNLSAEGTSASPSLDKKSESTNIV 430
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 140 DKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQ-IKLDDGW 316
+K ++ E ++++AK+E+ + + E+ ++ ++ +F +L + Q+ I +
Sbjct: 886 EKGLSTEQRDEKKHAKVESFQRQ-EMPRSLFEEI--FFAIDSLTPNPQQQDTVINAVPTF 942
Query: 317 VPLETLTKFNRLAKLTEDTDVIANALNKS 403
P +TKFN+ K+ T + A +S
Sbjct: 943 APYNAMTKFNQKVKVMPGTGKVGKAARES 971
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +2
Query: 95 IKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHR 274
++E ++++ D E +T ++ + K+E E+E E + ++R+ ++
Sbjct: 57 LEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKA 116
Query: 275 DKFLQEQIKL----DDGWVPLETLTKFNRLAKLTEDTDVIANAL 394
+ F + L DD LE +T ++ K+ + D + AL
Sbjct: 117 EHFERRVQSLERERDDMEQKLEEMT--DKYTKVKAELDEVHQAL 158
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 98 KESHRVIPEIKMTEDKEVTVETN-GQEENAK-IENSEDETELDIAIIRQV 241
+E+ + E ++ ED++V +ET+ QEE K IEN + E A ++V
Sbjct: 241 EEAVEAMEEDEVAEDEDVVLETSISQEEEKKNIENPDTEVTFISADTKKV 290
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 3.0
Identities = 24/131 (18%), Positives = 58/131 (44%)
Frame = +2
Query: 92 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLH 271
++++ P++ + V ++ N ++E ++ N +DE E+D + + N
Sbjct: 38 AVEDGTGTSPDLNFFSTQNV-MQMNFEDEYSEFSNEDDEAEIDNSFADSIP------NEP 90
Query: 272 RDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRR 451
+Q++ D +++ + N ED V ++ S + + +DN +
Sbjct: 91 EIPDMQDEYSRDSH--SQQSVEEQNNTTNTDEDASVNEFSVAADISDVNTLGKDNSE--- 145
Query: 452 NPEQPLPEMNE 484
+ E+P+ E+NE
Sbjct: 146 STEEPVNEVNE 156
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 47 LRSLNKLAF*NQKVF----SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDE 208
L S+N+ AF + K SI S + ED V + +E N + EN+EDE
Sbjct: 432 LGSINEQAFEDSKDLNDTNSITGSSPTEESNALVEDTSVDISATLEEANTQQENAEDE 489
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 98 KESHRVIPEIKMTEDKEVTVETNGQEENAKIENSED 205
K SH+ ++K +DK + G+ E AK+ ED
Sbjct: 55 KASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEED 90
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 309 SSNFICSCRNLSRC 268
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 160 FNSYLFVLSHFDFWNNTMRFFNGKYLLISES 68
F+SY V+ F +NNT FF G ++ + S
Sbjct: 132 FSSYQSVIDTFQKYNNTGAFFAGNEVVNNAS 162
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 290 EQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNK 400
E+++LD W T+ +F L E D ++ +NK
Sbjct: 611 EKVRLDRSWKDALTINEFFTLKNAVEKQDNVSFHVNK 647
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -1
Query: 314 IHHLILFVLAEIYLDVDLHHQNNIRLA 234
I +++ F +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 83 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETE 214
K F +K + R + E+K + D+E +V+ +E+ +K E+ + + +
Sbjct: 44 KAFLLKMAKRSVEELKRSADEEASVKR--KEKKSKHEHKKHKKD 85
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 92 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLH 271
S K S I K + + +V+++ E + + +SEDET+ ++R++E
Sbjct: 128 SNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQ---QLLRELENI--KQERK 182
Query: 272 RDKFLQEQ 295
R++ LQE+
Sbjct: 183 REQMLQEE 190
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +2
Query: 77 NQKVFSIKE---SHRVIPEIKMTEDKEVTVETNGQ---EENAKIENSEDETELDI 223
N +V KE S+ V PE+++TE ++ E+N + K+E E + D+
Sbjct: 59 NAEVKEFKETTKSNGVKPEVEITESTKIQKESNTEPCISTGGKVEEKELKVNKDV 113
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 98 KESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDE 208
K S + I++ +EV E +EE +++N ED+
Sbjct: 197 KHSEFISYPIQLVVTREVEKEVPEEEETEEVKNEEDD 233
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 351 RRLNFVRVSNGTHPSSNFICSCRNLSRCRF 262
R N R+ + P+SN +C RN S+CRF
Sbjct: 352 RSSNRFRLFPASTPNSNGLC--RNDSKCRF 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,294
Number of Sequences: 5004
Number of extensions: 41883
Number of successful extensions: 159
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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