Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321A10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 42 4e-05
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 32 0.045
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.56
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 1.3
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 1.3
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 27 1.7
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 1.7
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 27 1.7
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 2.2
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 26 3.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 3.0
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 3.0
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 3.9
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 3.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 3.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 5.2
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 5.2
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 5.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 5.2
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 5.2
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 25 6.8
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 6.8
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 25 6.8
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 6.8
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 9.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.0
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 9.0
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 42.3 bits (95), Expect = 4e-05
Identities = 23/95 (24%), Positives = 42/95 (44%)
Frame = +1
Query: 214 NKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDL 393
N PKR ++ F F + R + NP + + + K W++L + ++ ++D
Sbjct: 14 NTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDK 73
Query: 394 EDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEK 498
E Y + + Y+T L +K A AKE+
Sbjct: 74 ERYERERKEYDTKLANGEKTGKASAPAAAAAAKEE 108
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 32.3 bits (70), Expect = 0.045
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +1
Query: 316 AWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEE----MA 483
AW + + +L E + + E ++++ED N+ Y +S + Q +R EE A
Sbjct: 143 AWYAFNSHELSDEENSDSSNEREEEVEDDNRSVESYSSS--DYQARSRRRFSEETTQRRA 200
Query: 484 QAKEKRKLKAEY 519
+ KEKRK + E+
Sbjct: 201 EIKEKRKKRKEF 212
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.56
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 367 MAKEYQKDLEDYNKIKAMYE--TSLTEEQKADIKRVKEE 477
M+++YQK LED K K+ YE +L +++ + K ++E
Sbjct: 464 MSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQE 502
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 1.3
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Frame = +1
Query: 205 LGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQ-MAK-- 375
+GL+K P F F+S +RP L A P A L K Q AK
Sbjct: 772 IGLDKNLN--APKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRA 829
Query: 376 EYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQ 486
E +K + N + + TEE++A + EE +Q
Sbjct: 830 EREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKSQ 866
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 304 KEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMA 483
+E A S W + + T+ + +K Y K A Y ++ +E+ KR K +
Sbjct: 426 REIPASDSIAWHSISKKLGTKSPESCRKQ---YEKTIASYSSNQRQEEDQGKKRKKRKKK 482
Query: 484 QAKEKRK 504
++K KRK
Sbjct: 483 KSKGKRK 489
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 340 QLDMETKTQMAKEYQKDLEDY---NKIKAMYETSLTEEQKADIKRVKEEMAQA--KEKRK 504
++D+E + K+Y+K D N +A E + + + +KR K+E +A +E +K
Sbjct: 122 KIDVEETEEKVKQYEKQNRDSIAANSARAAAEARILAQNEILLKRQKQEAREAAIREHQK 181
Query: 505 LK 510
K
Sbjct: 182 EK 183
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 274 LLAKNPGISSKEAIAWTSKHWQQL--DMETKTQMAKEYQKDLEDYNK 408
LL KN IS K + S ++QL ++ K +K YQK LED N+
Sbjct: 803 LLPKN--ISMKSYHSLFSSQFRQLFEELSNKETQSKLYQKRLEDLNE 847
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 364 QMAKEYQKDLEDYNKIKAMY 423
++A ++ +DL DYN IK +Y
Sbjct: 26 EVAVDFDRDLSDYNTIKGVY 45
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +1
Query: 241 FFKFMSQMR--PALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLE--DYNK 408
F +MS+ R +L+ K +A + K W+ ++ K A Y+K + +N+
Sbjct: 287 FTNWMSKRRRNESLIQKANVFFQHSVLAHSFKTWKA-NLSIKNA-ATLYEKKVVFMSFNR 344
Query: 409 IKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 516
A YE+ + + QKA++ K + A K KL+ E
Sbjct: 345 WHANYESHVLDLQKAELFSQKAYYSIALHKWKLRIE 380
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 373 KEYQKD--LEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 516
K++Q+ L D + +K + EQ D+KRV EE+++ ++K+ L+++
Sbjct: 102 KDWQEGELLPDGSNVKTLSRYPKVLEQ-VDMKRVNEELSKLQDKQILESQ 150
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 373 KEYQKDLEDYNKIKAMYE 426
KEY+ L+DYN+++A Y+
Sbjct: 1063 KEYKSLLDDYNQLRARYK 1080
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 346 DMETKTQMAKEYQKDLEDYN----KIKAMYETSLTEEQKADIKRVKEEM 480
D + KE QK+LE YN K + +++T+E + +K ++E +
Sbjct: 996 DKNELEERLKEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTLREAL 1044
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 3.0
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Frame = +1
Query: 109 FLGNYKTVLCGRVNWITPIQSCDYTKKSAEQRLGLNKPKRPLT-PFFKFMSQMRPALLAK 285
+LGN K + + + TKKS++QRL +N L + +++ + + +
Sbjct: 119 YLGNGKPIEASQTEESSSTPPSPATKKSSKQRLTMNSRDAALDYEEYLAIAKEKSLIPRR 178
Query: 286 NPGISSKEAIA--WTSKHWQQLDMETKTQMAKEYQKDLEDYNKIK----AMYETSLTEEQ 447
+ G +S ++++ Q ++ K ++ +E + LED + K ETS T
Sbjct: 179 SRGRTSSKSLSPPAPQDESQGTEINLKQKIEEENDEILEDSKESKDENEENKETSTTNVA 238
Query: 448 KADIKRVK-----EEMAQAKEKRKLKAE 516
+ D + EE+A +EK +K E
Sbjct: 239 ETDAPEEETVDTVEEIAD-EEKHSVKEE 265
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 226 RPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYN 405
RP F + + LL NP I++ + + W+ E+K ++ Y K E Y
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN---ESK-EVRMRYFKMSEFYK 160
Query: 406 -KIKAMYETSLTEEQKADIKR 465
+ + MY + +K +KR
Sbjct: 161 AQHQKMYPGYKYQPRKNKVKR 181
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 226 RPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYN 405
RP F + + LL NP I++ + + W+ E+K ++ Y K E Y
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN---ESK-EVRMRYFKMSEFYK 160
Query: 406 -KIKAMYETSLTEEQKADIKR 465
+ + MY + +K +KR
Sbjct: 161 AQHQKMYPGYKYQPRKNKVKR 181
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 424 ETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 516
ETSLTEEQK ++ +++ A + + E
Sbjct: 807 ETSLTEEQKIQLEEARKQRKAADDAARAAIE 837
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 346 DMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQ 447
D + + KE +DLE N + A E +L EEQ
Sbjct: 1608 DAKLMEKTLKEVIEDLEKNNSLHAYEEEALNEEQ 1641
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 391 LEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 516
+ED K K++ E+S +E +A K K +AK+++K K E
Sbjct: 422 VEDSKKRKSV-ESSEKDEDEAAKKEEKRRKKEAKKEKKEKKE 462
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +1
Query: 166 QSCDYTKKSAEQR--LGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQ 339
+S DY+K E+ LGL++ + + + G+S +E IA+ + Q
Sbjct: 535 KSSDYSKNEVEREIMLGLDQIAQERREKMEARQKFEQHFGEGLVGLSEEEIIAYVTMLSQ 594
Query: 340 QLDMETKTQMAKEYQKDLEDYNKIKAMYETSL 435
+ + + Q++ + K ED+ + +SL
Sbjct: 595 EEEAKRMVQLSMDVDKIEEDFKENDEQATSSL 626
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 5.2
Identities = 23/99 (23%), Positives = 35/99 (35%)
Frame = +1
Query: 220 PKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLED 399
P +PL P + ++P L N IA Q E +
Sbjct: 1728 PYQPLQPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAPSAEAVAAPSESL----N 1783
Query: 400 YNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 516
NK ++ + AD+ R +EE + K+K K AE
Sbjct: 1784 LNKDRSQQAKQAAAQNVADLVRQEEEKEKQKQKAKKNAE 1822
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 364 QMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKL 507
+++++ +DL D K++ ETS T + ++ E++ Q K+ RKL
Sbjct: 679 EISRKMFEDLADL-KVRRNPETSRTVMDRRTFQQTLEKLMQEKKVRKL 725
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 328 KHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEE 444
+ W+ L M ++ + +LE YN A +E S +E
Sbjct: 694 REWKSLMMHNSYTVSVKKHPELEGYNAKLARFERSFLDE 732
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 309 LFG*YARVLGKKSWS 265
LFG Y+ +LGK WS
Sbjct: 277 LFGVYSSILGKNKWS 291
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 334 WQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKR 465
W DME+ ++ ++ + + Y+ + A + EQKA +K+
Sbjct: 372 WVARDMESGQEVVLDFVVERKRYDDLVASIKDGRFHEQKARLKK 415
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 167 CIGVIQFTLPHRTVL*FPKK*LLRRCN 87
C+ + F P+ +L FP +LR+CN
Sbjct: 173 CMALTVFINPNALLLFFPSYLILRKCN 199
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 364 QMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEY 519
+ A+ + ++E K + E + K VKE+ +EKRK K E+
Sbjct: 491 EQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRKSKKEF 542
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.0 bits (52), Expect = 6.8
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Frame = +1
Query: 253 MSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKD----LEDYNKIKAM 420
+SQ NP +E A + +++ E KT +++ Q+ + N+++
Sbjct: 370 ISQDHSVFREVNPSAKLEEERALHEEKLMKMEAEMKTIFSQKVQEKEDRLKQSENELRTR 429
Query: 421 YET--SLTEEQKADIKRVKEEMAQAK---EKRKLKAEY 519
+ + E+QKAD+ K + QAK E K K ++
Sbjct: 430 HREMKAALEKQKADLIDHKNRLMQAKAAAENEKSKRKF 467
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/116 (14%), Positives = 44/116 (37%)
Frame = +1
Query: 169 SCDYTKKSAEQRLGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLD 348
S Y + LG K P + + L + + ++ + D
Sbjct: 78 SLKYLSSINPEDLGKKVEKGPRPDIYDLKKSQQFELDTSRLSSDEESVLDYSKDSEDEQD 137
Query: 349 METKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 516
E + +++ + E YN++ + L + AD+ +E +++++ + L+ +
Sbjct: 138 YELRPRVSSSWNN--ESYNRLPIKTKDGLLQNVVADVNNGEEFLSESESEASLEID 191
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 253 MSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETS 432
+S + L S+K++ A+ E + K+Y+K ED + IKA S
Sbjct: 182 VSYFQKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKA----S 237
Query: 433 LTEEQKAD 456
L EEQ ++
Sbjct: 238 LAEEQASN 245
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 254 CHKCDQLFLPRTLAYHPKRL*HGRRNIGNNLIWRQKPKWRKN 379
C KCD +F+ ++ + KR H + +I ++ WR+N
Sbjct: 141 CDKCDMMFVKQSGLTNHKRTYHQVETV--VIIGHRRYVWRRN 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,576
Number of Sequences: 5004
Number of extensions: 41644
Number of successful extensions: 143
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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